RNA id: TCONS_00030634


Basic Information

Item Value
RNA id TCONS_00030634
length 538
RNA type processed_transcript
GC content 0.46
exon number 3
gene id XLOC_015273
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 12302527 ~ 12406641 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATTTGTCATCGTCGTGTTGCACGTTTCATATCTTATAAGACTATTATTAACAGAGAGGATACAGAGCTGTGATGGTGTAATGTGTCTGAAAAGCCTCTTTGCTGTCTCTCGTTGTCTCTGAAGCTGACCGCAAGGAGTTCTAGCATGATTCAACCACCAGTGACTCTGCCAAATCCAAGCAGGGTTCCTGGGGAACTGGTAAGGACCAATATAGTAGCGAGCTGCTGCGTACTTCCATCTTTGCTAGCCGCAAACGCAAAAAGCCTAAGGACAAGCCTCAGCCAAGTAGCTCTGATGATGACCTGGATGCTAGTTTTTCCAAGAAAGATCTTCCGGTGCAAAATGATCCAAATTGGCCTGCTGATGACCAAACCGAAGATGCAGAAAGTGAAGTAGGACTCGATGACCAAAGGACTGAGGATGATGACCAGAGCCCAGGAGATGGCCTTGACCTCACTTCTGAAAACAAGCAGCTCATCACAGAACATTTGCCCCAGCAAACATGTCCCTCATCTAAGATCAATACATCGCCCAAAC

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function
GO:0005543 phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4944 Predicted to enable GTPase activator activity and phospholipid binding activity. Predicted to act upstream of or within signal transduction. Orthologous to human ARHGAP21 (Rho GTPase activating protein 21).

Ensembl:

ensembl_id ENSDART00000144018

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030618 lncRNA upstream 752417 11648163 ~ 11648838 (+) True XLOC_015267
TCONS_00033490 lncRNA upstream 767932 11629002 ~ 11633323 (+) False XLOC_015266
TCONS_00033491 lncRNA upstream 767932 11629011 ~ 11633323 (+) False XLOC_015266
TCONS_00033492 lncRNA upstream 767932 11629043 ~ 11633323 (+) True XLOC_015266
TCONS_00030616 lncRNA upstream 1191573 11208463 ~ 11209682 (+) True XLOC_015264
TCONS_00033493 lncRNA downstream 231896 12635927 ~ 12637877 (+) True XLOC_015274
TCONS_00030635 lncRNA downstream 394335 12798366 ~ 12802906 (+) True XLOC_015275
TCONS_00033242 lncRNA downstream 443629 12847660 ~ 12852426 (+) True XLOC_015276
TCONS_00033243 lncRNA downstream 943369 13347400 ~ 13351251 (+) False XLOC_015280
TCONS_00033494 lncRNA downstream 943431 13347462 ~ 13351299 (+) True XLOC_015280
TCONS_00030627 mRNA upstream 120747 12255568 ~ 12280508 (+) False XLOC_015272
TCONS_00030628 mRNA upstream 120786 12255575 ~ 12280469 (+) True XLOC_015272
TCONS_00030626 mRNA upstream 398080 11946554 ~ 12003175 (+) True XLOC_015271
TCONS_00030625 mRNA upstream 402958 11946554 ~ 11998297 (+) False XLOC_015271
TCONS_00030623 mRNA upstream 455319 11923615 ~ 11945936 (+) False XLOC_015270
TCONS_00030636 mRNA downstream 443571 12847602 ~ 12956329 (+) False XLOC_015276
TCONS_00030637 mRNA downstream 443583 12847614 ~ 13037544 (+) False XLOC_015276
TCONS_00030638 mRNA downstream 646194 13050225 ~ 13051517 (+) True XLOC_015277
TCONS_00030639 mRNA downstream 652771 13056802 ~ 13148453 (+) False XLOC_015278
TCONS_00030640 mRNA downstream 665137 13069168 ~ 13145704 (+) True XLOC_015278
TCONS_00030633 other upstream 6272 12394623 ~ 12394983 (+) False XLOC_015273
TCONS_00030632 other upstream 22652 12376822 ~ 12378603 (+) False XLOC_015273
TCONS_00030621 other upstream 636257 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030617 other upstream 1157248 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030605 other upstream 1394465 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030641 other downstream 719535 13123566 ~ 13123682 (+) True XLOC_015279
TCONS_00030650 other downstream 2256325 14660356 ~ 14660546 (+) True XLOC_015290
TCONS_00030651 other downstream 2261137 14665168 ~ 14665353 (+) True XLOC_015291
TCONS_00030652 other downstream 2266966 14670997 ~ 14671173 (+) True XLOC_015292
TCONS_00030653 other downstream 2271764 14675795 ~ 14675985 (+) True XLOC_015293

Expression Profile

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