Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00033242 |
| length | 1088 |
| lncRNA type | sense_over |
| GC content | 0.42 |
| exon number | 3 |
| gene id | XLOC_015276 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 12847602 ~ 13037544 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0044666 | MLL3/4 complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0042393 | histone binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0042800 | histone methyltransferase activity (H3-K4 specific) | molecular_function |
| GO:0003713 | transcription coactivator activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00030635 | lncRNA | upstream | 44754 | 12798366 ~ 12802906 (+) | True | XLOC_015275 |
| TCONS_00033493 | lncRNA | upstream | 209783 | 12635927 ~ 12637877 (+) | True | XLOC_015274 |
| TCONS_00030618 | lncRNA | upstream | 1198822 | 11648163 ~ 11648838 (+) | True | XLOC_015267 |
| TCONS_00033490 | lncRNA | upstream | 1214337 | 11629002 ~ 11633323 (+) | False | XLOC_015266 |
| TCONS_00033243 | lncRNA | downstream | 494974 | 13347400 ~ 13351251 (+) | False | XLOC_015280 |
| TCONS_00033494 | lncRNA | downstream | 495036 | 13347462 ~ 13351299 (+) | True | XLOC_015280 |
| TCONS_00033496 | lncRNA | downstream | 1097632 | 13950058 ~ 13958576 (+) | False | XLOC_015285 |
| TCONS_00033495 | lncRNA | downstream | 1097632 | 13950058 ~ 13958576 (+) | False | XLOC_015285 |
| TCONS_00033244 | lncRNA | downstream | 1097725 | 13950151 ~ 13954515 (+) | False | XLOC_015285 |
| TCONS_00030631 | mRNA | upstream | 441019 | 12349870 ~ 12406641 (+) | False | XLOC_015273 |
| TCONS_00030630 | mRNA | upstream | 442451 | 12302527 ~ 12405209 (+) | False | XLOC_015273 |
| TCONS_00030629 | mRNA | upstream | 442451 | 12302527 ~ 12405209 (+) | False | XLOC_015273 |
| TCONS_00030627 | mRNA | upstream | 567152 | 12255568 ~ 12280508 (+) | False | XLOC_015272 |
| TCONS_00030638 | mRNA | downstream | 197799 | 13050225 ~ 13051517 (+) | True | XLOC_015277 |
| TCONS_00030639 | mRNA | downstream | 204376 | 13056802 ~ 13148453 (+) | False | XLOC_015278 |
| TCONS_00030640 | mRNA | downstream | 216742 | 13069168 ~ 13145704 (+) | True | XLOC_015278 |
| TCONS_00030642 | mRNA | downstream | 609879 | 13462305 ~ 13556577 (+) | False | XLOC_015281 |
| TCONS_00030643 | mRNA | downstream | 609969 | 13462395 ~ 13673494 (+) | True | XLOC_015281 |
| TCONS_00030634 | other | upstream | 443629 | 12401255 ~ 12404031 (+) | True | XLOC_015273 |
| TCONS_00030633 | other | upstream | 452677 | 12394623 ~ 12394983 (+) | False | XLOC_015273 |
| TCONS_00030632 | other | upstream | 469057 | 12376822 ~ 12378603 (+) | False | XLOC_015273 |
| TCONS_00030621 | other | upstream | 1082662 | 11756924 ~ 11764998 (+) | False | XLOC_015269 |
| TCONS_00030617 | other | upstream | 1603653 | 11243886 ~ 11244007 (+) | True | XLOC_015265 |
| TCONS_00030641 | other | downstream | 271140 | 13123566 ~ 13123682 (+) | True | XLOC_015279 |
| TCONS_00030650 | other | downstream | 1807930 | 14660356 ~ 14660546 (+) | True | XLOC_015290 |
| TCONS_00030651 | other | downstream | 1812742 | 14665168 ~ 14665353 (+) | True | XLOC_015291 |
| TCONS_00030652 | other | downstream | 1818571 | 14670997 ~ 14671173 (+) | True | XLOC_015292 |
| TCONS_00030653 | other | downstream | 1823369 | 14675795 ~ 14675985 (+) | True | XLOC_015293 |
