Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00030639 |
| length | 2139 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 16 |
| gene id | XLOC_015278 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 13056802 ~ 13148453 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042149 | cellular response to glucose starvation | biological_process |
| GO:0071900 | regulation of protein serine/threonine kinase activity | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0050790 | regulation of catalytic activity | biological_process |
| GO:0031588 | nucleotide-activated protein kinase complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0019887 | protein kinase regulator activity | molecular_function |
| GO:0019901 | protein kinase binding | molecular_function |
| GO:0016208 | AMP binding | molecular_function |
| GO:0004679 | AMP-activated protein kinase activity | molecular_function |
| GO:0032559 | adenyl ribonucleotide binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070912-442 | Predicted to enable AMP binding activity; protein kinase binding activity; and protein kinase regulator activity. Predicted to be involved in cellular response to glucose starvation; protein phosphorylation; and regulation of catalytic activity. Predicted to act upstream of or within regulation of protein serine/threonine kinase activity. Predicted to be part of nucleotide-activated protein kinase complex. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Wolff-Parkinson-White syndrome; glycogen storage disease; hypertrophic cardiomyopathy 6; and lethal congenital glycogen storage disease of heart. Orthologous to human PRKAG2 (protein kinase AMP-activated non-catalytic subunit gamma 2). |
| ensembl_id | ENSDART00000142649 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033242 | lncRNA | upstream | 204376 | 12847660 ~ 12852426 (+) | True | XLOC_015276 |
| TCONS_00030635 | lncRNA | upstream | 253896 | 12798366 ~ 12802906 (+) | True | XLOC_015275 |
| TCONS_00033493 | lncRNA | upstream | 418925 | 12635927 ~ 12637877 (+) | True | XLOC_015274 |
| TCONS_00030618 | lncRNA | upstream | 1407964 | 11648163 ~ 11648838 (+) | True | XLOC_015267 |
| TCONS_00033492 | lncRNA | upstream | 1423479 | 11629043 ~ 11633323 (+) | True | XLOC_015266 |
| TCONS_00033243 | lncRNA | downstream | 198947 | 13347400 ~ 13351251 (+) | False | XLOC_015280 |
| TCONS_00033494 | lncRNA | downstream | 199009 | 13347462 ~ 13351299 (+) | True | XLOC_015280 |
| TCONS_00033496 | lncRNA | downstream | 801605 | 13950058 ~ 13958576 (+) | False | XLOC_015285 |
| TCONS_00033495 | lncRNA | downstream | 801605 | 13950058 ~ 13958576 (+) | False | XLOC_015285 |
| TCONS_00033244 | lncRNA | downstream | 801698 | 13950151 ~ 13954515 (+) | False | XLOC_015285 |
| TCONS_00030638 | mRNA | upstream | 5285 | 13050225 ~ 13051517 (+) | True | XLOC_015277 |
| TCONS_00030637 | mRNA | upstream | 19258 | 12847614 ~ 13037544 (+) | False | XLOC_015276 |
| TCONS_00030636 | mRNA | upstream | 100473 | 12847602 ~ 12956329 (+) | False | XLOC_015276 |
| TCONS_00030631 | mRNA | upstream | 650161 | 12349870 ~ 12406641 (+) | False | XLOC_015273 |
| TCONS_00030630 | mRNA | upstream | 651593 | 12302527 ~ 12405209 (+) | False | XLOC_015273 |
| TCONS_00030642 | mRNA | downstream | 313852 | 13462305 ~ 13556577 (+) | False | XLOC_015281 |
| TCONS_00030643 | mRNA | downstream | 313942 | 13462395 ~ 13673494 (+) | True | XLOC_015281 |
| TCONS_00030645 | mRNA | downstream | 545997 | 13694450 ~ 13721149 (+) | False | XLOC_015282 |
| TCONS_00030644 | mRNA | downstream | 545997 | 13694450 ~ 13721149 (+) | False | XLOC_015282 |
| TCONS_00030646 | mRNA | downstream | 561986 | 13710439 ~ 13717739 (+) | True | XLOC_015282 |
| TCONS_00030634 | other | upstream | 652771 | 12401255 ~ 12404031 (+) | True | XLOC_015273 |
| TCONS_00030633 | other | upstream | 661819 | 12394623 ~ 12394983 (+) | False | XLOC_015273 |
| TCONS_00030632 | other | upstream | 678199 | 12376822 ~ 12378603 (+) | False | XLOC_015273 |
| TCONS_00030621 | other | upstream | 1291804 | 11756924 ~ 11764998 (+) | False | XLOC_015269 |
| TCONS_00030617 | other | upstream | 1812795 | 11243886 ~ 11244007 (+) | True | XLOC_015265 |
| TCONS_00030650 | other | downstream | 1511903 | 14660356 ~ 14660546 (+) | True | XLOC_015290 |
| TCONS_00030651 | other | downstream | 1516715 | 14665168 ~ 14665353 (+) | True | XLOC_015291 |
| TCONS_00030652 | other | downstream | 1522544 | 14670997 ~ 14671173 (+) | True | XLOC_015292 |
| TCONS_00030653 | other | downstream | 1527342 | 14675795 ~ 14675985 (+) | True | XLOC_015293 |
| TCONS_00030654 | other | downstream | 1564941 | 14713394 ~ 14713538 (+) | True | XLOC_015294 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000004_02198207_02227474.mRNA | True | 2468 | mRNA | 0.46 | 18 | CI01000004 | 2197584 ~ 2227474 (-) |
