RNA id: TCONS_00033243


Basic Information

Item Value
RNA id TCONS_00033243
length 1615
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id XLOC_015280
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 13347400 ~ 13351299 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGACTTATGAAGAATTTTTATCACACTTTAATtttcctgcactgtaaaaaatccaacttgcAAATTGCTAACTCAAATCAAAATTGTAAGTTGGGTGGACATATTTTGAGCCCAGTGTTgagtttacttttaaaaatgagttaactGAAGGTTTAAAACTGGTTTGTTCAATGAAAGTAAATACTTAAGTTGAGCAGACTTTACATTTTGAGTTCTTCACTGGATCATCTACTTCCCGTCTTTGCACATGCTCAGTCTGTCTTCGGGTGCCATTTTGCACGAGGTGTCCTCTCACCAGCAGCAGCTGCCATCTCCTGATTCAGgtTTGGAATGCAGTGTAAGTTTTGCAAATTTGTAAACAGTAGCTGAGAAGTTACACTACAGACTACATCGCTATCAAGGACCATCCTGGCAGCAGCCTTGTTTGTTCGCAGACTGCTTCTGCACTTTAAAGACTCTGATGTCCGAAAACAGTGGCCTGCATGTTTTTGAGAGTTCAGGTCTATGCTGAGTTTTACAGGATTACTCAAACCAACCTCAAAGATATCTTCTCTTTTTCGGATGAATACGCTATCAAGTTTTATGGATCATGTGGTGGGCGATATGGAGAGATAATAAGAACCGCCCTGGACCAACTGGACAATCAAGACACAGAGCCAGAAGATACTTGCACAATAGAGATGGAGATGGACATCCTTAGCACTGTTGAAGATGATGTTGCCACTCTTCAGACCAACCTAAATGTAAGGTGCCTGTCTGTGGTTCTGGAAGAGCAAATCGTGCTGGAAAAGATCTTCCGACAGCTGTTGTTCTCCTCTTTGGTTTGATTAATTTCCTCATTATGAACTACCCCAAAGAACTGAAACACATCTTTGAAACTATTCAGAAAGTGTTTATTGGCCTTGAATGCATTTGTTTGTACACTGAAATAGTGTTACTCTTGGTGTTGTCACCAAActtaaattcagttttgattttacattttcaaattttaaaaacatccatttcccaccAATTGATAGATTGGCTGTTGTGTTCAAGCgctcaacataaatgactgtgattggctgagaagtTCACCATTTCACTGCTCTTCACTGATGTTCATGGAGTgcaacacagatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacttgtgtcaGCTTATACACAGACCAGTTGATCAATGTGAAATTCttaagtgtccctgtatctgtggttacactcagtaaacagcagtgagtttggtgaactgatgatcttcacGCCCAATCAgtcttttctgttgagcatgtgaacacaatggcaatatAACAGTGTTTAAAACATGGTCAAcaacgctcaaatgttagcaggaaatggacgtttttaaaattataGAACTGATgggtaacaaaattaaaatatcgtGACAAAACTAATTACTCTTgcactttgaaaaaaatgttgatagtgcaagcattttaaatattacttttgctTAACTCGAGCACTTAAAAGGCAATATAGGATTTGAGGATTTACCTTTTTGTTGCCTCTTTTCCTTCTCTGGACTGCAGTACATTTCATTTGG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0007389 pattern specification process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

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Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033242 lncRNA upstream 494974 12847660 ~ 12852426 (+) True XLOC_015276
TCONS_00030635 lncRNA upstream 544494 12798366 ~ 12802906 (+) True XLOC_015275
TCONS_00033493 lncRNA upstream 709523 12635927 ~ 12637877 (+) True XLOC_015274
TCONS_00030618 lncRNA upstream 1698562 11648163 ~ 11648838 (+) True XLOC_015267
TCONS_00033491 lncRNA upstream 1714077 11629011 ~ 11633323 (+) False XLOC_015266
TCONS_00033496 lncRNA downstream 598807 13950058 ~ 13958576 (+) False XLOC_015285
TCONS_00033495 lncRNA downstream 598807 13950058 ~ 13958576 (+) False XLOC_015285
TCONS_00033244 lncRNA downstream 598900 13950151 ~ 13954515 (+) False XLOC_015285
TCONS_00033497 lncRNA downstream 599018 13950269 ~ 13958576 (+) True XLOC_015285
TCONS_00033498 lncRNA downstream 609878 13961129 ~ 13962397 (+) True XLOC_015286
TCONS_00030639 mRNA upstream 198947 13056802 ~ 13148453 (+) False XLOC_015278
TCONS_00030640 mRNA upstream 201696 13069168 ~ 13145704 (+) True XLOC_015278
TCONS_00030638 mRNA upstream 295883 13050225 ~ 13051517 (+) True XLOC_015277
TCONS_00030637 mRNA upstream 309856 12847614 ~ 13037544 (+) False XLOC_015276
TCONS_00030636 mRNA upstream 391071 12847602 ~ 12956329 (+) False XLOC_015276
TCONS_00030642 mRNA downstream 111054 13462305 ~ 13556577 (+) False XLOC_015281
TCONS_00030643 mRNA downstream 111144 13462395 ~ 13673494 (+) True XLOC_015281
TCONS_00030645 mRNA downstream 343199 13694450 ~ 13721149 (+) False XLOC_015282
TCONS_00030644 mRNA downstream 343199 13694450 ~ 13721149 (+) False XLOC_015282
TCONS_00030646 mRNA downstream 359188 13710439 ~ 13717739 (+) True XLOC_015282
TCONS_00030641 other upstream 223718 13123566 ~ 13123682 (+) True XLOC_015279
TCONS_00030634 other upstream 943369 12401255 ~ 12404031 (+) True XLOC_015273
TCONS_00030633 other upstream 952417 12394623 ~ 12394983 (+) False XLOC_015273
TCONS_00030632 other upstream 968797 12376822 ~ 12378603 (+) False XLOC_015273
TCONS_00030621 other upstream 1582402 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030650 other downstream 1309105 14660356 ~ 14660546 (+) True XLOC_015290
TCONS_00030651 other downstream 1313917 14665168 ~ 14665353 (+) True XLOC_015291
TCONS_00030652 other downstream 1319746 14670997 ~ 14671173 (+) True XLOC_015292
TCONS_00030653 other downstream 1324544 14675795 ~ 14675985 (+) True XLOC_015293
TCONS_00030654 other downstream 1362143 14713394 ~ 14713538 (+) True XLOC_015294

Expression Profile

Expression of TCONS_00033243 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
End of interactive chart.
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Expression of TCONS_00033243 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
End of interactive chart.