RNA id: TU388350



Basic Information


Item Value
RNA id TU388350
length 310
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G343153
representative True

Chromosome Information


Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 32026217 ~ 32026526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATTTTtataaatgctaaaaatccaatcttactgaaacgTATTTCACTTTTTGGCCTATCCCTCTTTACTGGTATATCTttactactctcaccactcctcccccttaacccatcttcctctacattcttcactgcctcagcatatgacatcttctgctctactctaaccctggaaacctcaacctgcctctctcgcacagGAAATGTCTGATTCCCAGCTCaatgggcacccctacaattaacacattccactactttcctcaatactacacattcctttgtctcatgcccttctgcacatttCTCACAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU388261 lncRNA upstream 104123 31921553 ~ 31922094 (+) True G343068
TU388241 lncRNA upstream 125172 31900581 ~ 31901045 (+) True G343051
TU388239 lncRNA upstream 128000 31897935 ~ 31898217 (+) True G343050
TU388227 lncRNA upstream 133639 31892281 ~ 31892578 (+) True G343038
TU388219 lncRNA upstream 147704 31878276 ~ 31878513 (+) True G343030
TU388372 lncRNA downstream 8597 32035123 ~ 32035333 (+) True G343175
TU388440 lncRNA downstream 154758 32181284 ~ 32182676 (+) True G343242
TU388613 lncRNA downstream 177637 32204163 ~ 32204376 (+) True G343394
TU388615 lncRNA downstream 178898 32205424 ~ 32206262 (+) True G343396
TU388624 lncRNA downstream 188615 32215141 ~ 32215402 (+) True G343404
XM_021600937.2 mRNA upstream 10347 31980595 ~ 32015870 (+) True LOC110522501
LOC118964494 mRNA upstream 217834 31803746 ~ 31808383 (+) True LOC118964494
XM_036976104.1 mRNA upstream 276614 31632668 ~ 31749603 (+) False LOC110521078
XR_002473332.2 mRNA downstream 1514 32028040 ~ 32052239 (+) False tdrd6
XM_021600940.2 mRNA downstream 1514 32028040 ~ 32052842 (+) False tdrd6
XM_021600939.2 mRNA downstream 1515 32028041 ~ 32052842 (+) True tdrd6
LOC110521080 mRNA downstream 46235 32072761 ~ 32082328 (+) True LOC110521080
XR_005051571.1 mRNA downstream 65634 32092160 ~ 32092446 (+) True LOC118964510
TU387844 other upstream 240011 31785865 ~ 31786206 (+) True G342707
TU387645 other upstream 574741 31451133 ~ 31451476 (+) True G342571
TU387623 other upstream 606961 31417955 ~ 31419256 (+) False LOC110522493
TU387608 other upstream 643468 31381826 ~ 31382749 (+) True G342538
TU384729 other upstream 2689278 29335369 ~ 29336939 (+) True G339928
TU389208 other downstream 668460 32694986 ~ 32704371 (+) True G343958
TU389960 other downstream 1445526 33472052 ~ 33486197 (+) False LOC110521085
TU389956 other downstream 1450167 33476693 ~ 33489784 (+) True LOC110521085
TU390025 other downstream 1525601 33552127 ~ 33554003 (+) False G344647
TU390035 other downstream 1558452 33584978 ~ 33586311 (+) True LOC110522521

Expression Profile