RNA id: TCONS_00033504


Basic Information

Item Value
RNA id TCONS_00033504
length 3348
lncRNA type intronic
GC content 0.47
exon number 4
gene id XLOC_015289
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 14502058 ~ 14506622 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTAtttaaatatagactttttaATTTACTGATACATAaaccaaaattataaataaacagagCAACTCTCCCACACCTTTGAGAGCCTTTATTCTGAACCCATGATAGTACATGACCATTTTAAAACTGAAACAGGCATTGCATAACATGGCATTGCATTAGTCTTATCAATGGTTTTGTTGGCTTATCTGTTTATGAAGTTGCATTGCgattacatacagtaatttgGTGTATGCTGAATTTGGGTCTTAGTACTTTAAGCACATTTTCACATTAAGTGATCTTAAGAGTGTACATCACTGCAGGCATGTTGTCATGTAGACCTACAGTCTAATGGGGAGAGCGTTTCACTGAGTATTTCGCTTTTTAACAGAACAGAGGTGACAATCTAACTAATATGTTGGTTTAGATAAATTATTAGTTCAGTTTCACCTAAGATGTCTTGAGGGTGAATAAAAGTTGGTGTAATTTTAATTTCAAAGTGAACTAATCATTTAATTCCTACGTTTTgctgaaaataatattttgctctgtattatactgtatttattgtGGATAAAACAGTATAGACAAGCAGATCAGGCCTAATTAGAGCCTGTCATGCATAACACTTGATTTGGCTTAATGCAGTTAATATGATGAGTTACAATGATATTAAATTTTGAAAATGATATTACGATTTAATGTAGCCTTCACCTTGTTAATAAAAGCATATTATGCATTGACTAATGATGCAGACATGTTAAGCATTGTTCTACATTAAGCCATGTAAAGCATTTTAGGATATGTCCGAGTCATACAGCCATAACACAATACTTTCAAAGAGATTTGAGAAaaccatcaataaattaaaggaAAAGGGCATGGAAATAAAACACCATAACAAAATAGTGTATATTGAATTCACGCTCTTCTAACATTCAAATGACTTTGATTACCTAATCATCAGCAAAAATAAGCAAATGTTGTCAATTTAGGCGTCAAGAGCTTTCACCTTCCCTGATGCTTTTATtctaatttaatactttttttgttgaaaaaatacAGCATAGCAGTAGACAGTCAGAATATTTTGGCTAATAATTGTCAGTAAAAGATATACTGAAGTGTTGTATAAATTAAGTAGAGTTCAAGAAAACCACATAAATTATTTTCTACTGCTGTGGGCCTGGGCATGGAGCGGAGCTGGAGAAGGCCTGGGCGTGGAGCGAAGCTGAGGCGGGCCTAGGTGTGGAGGGGAGCTGAGGTGGGCCTGGGCGTGGAGCTGAGGCTGAGCTGAGGCAGACATGGACGTGGAGCTGAAGCTGAGCTGAGGTGGGCCTGGGCGTGGAGCTAAGGCTGAGCTGAGGCGGGTATGGAGCTGAGGTGAGCCTGGGCGTGGAGCTGAAGAAGGCCTGGGCATGGGGCTGAGCTGAGGGGCCTGAGGTGGGTCTGGGCGTGGAGCCAAGCCAAGGTGGTCCTGGGCATGAAGCTGAGCTGAAGCAGGCCTGAAGTGTAGCAGAGCACAAAGCTGAGGAGGGCCTAGACGTGCAGCTGAGCTGAGGCAGGCATGGGAGTGGAGCTGAAGCTGAGCTGAGGCGGGCCAGGGAGTGTAGGTCTGGGCATGGGCCTGAGGTGGGCCTGGGCATGGAGCCAAGCCGAGGTGGTCCTGGGCGTGAAGCAGAGCTGAGGTGGGCCTGGAGTGTAGCAGAGCACAGAGCTGAGGAGGGCCTAGGTGTGCAACTGATGCTAAGCTTAGGCAGGCATGCACGTGGAGCTGAAGCTGAGCTAAGGCGGGCCAGGGAGTGGAGCTGAGGCGACCCTGGGCATGGAGCTGAGGAGAGCCTGGGCATGGGGCTGAGCAGAGCCTGGGCATGGGGCTGAGCTGAGGCGGGCCTGGGCATGGGCCTGAGGTGGGCCTGGGCATGGATCTGAGCCGAGGTGGTCCTGGGCGTGAAGCAGAGCTGAGGCGGGCCTGGAGTGTAGCAGAGCACAGAGCTGAGGAGGGCCTAGGTGTGCAACTGATGCTGAGCTGAGGCAGGCATGGACTAGGAGTTGAAGGCAGGCATGAGCGTGGAGCTGAAGCTGAGCTGAGGCGGGCCAGGGAGTGGAGCTGAGGCGAGCCTGGGCGTGGAGCTGAAGCAAGCCTGGGTGTGGAGCTGAGGAGGGCCAGGGCCTGGAGCTGAGGCGAGCCTGGGCGTGGAGCTAAGATGAGCCTGGGCGTGGAGCTGAGGTGAGCCTGGGCATGGGGCTGAGCTGAGGTAGGCCTGGGCATGGAGCCAAGCCGAGGTGGTCCTGGGCATGAAGCAGAGCTGAAGCAGGCCTGATGTGAAGCAGAGCACAGAGCTGAGGAGTGCCTAGGCGTGCAGCTGAGCTGTGACGGGCCTGGGTGTGAAGCGGAGCTGAGGCAGGCCTGGGCGTGGAGCTGAGGCTGAGCTGAGGCGAGCCTGGGTGTGAAGCTAAGCCGTGACGGACCTGGGCATGAAGTGGAGCTGAGGTGGGCTTGGGCGTAGAGCTGAGGCTGCAATAATGACCTGCAGATATGCGTGTGTGACAAATCCAGATTGTCATCAGCTGTAGAgagtaatccgcttgttaagtgtgacgtcacgcagagcggcttccgggtccaagcgctctattcaactgaatggggagactcatgaaatggtactaataaacgtttaaaaagcgatttaatactttcgaaagtcacgatcgcagtatatatgtacatgcctaatatccaatggccagaaagtgattcattgttttataaattgttaaaatgttgatatttgttatgcagcaagcccagagattgttgtgtacactatgactttatataaaattaactttaatgtgtgataggaataaaacgtgatcataaacgaatgatttctccactcaaatgaatggcttggacccggaaacagtatacatacatcacaaacacgtcgccacttaacaagcggataggatTGGTGCAAAGCATGATGTTTGTGAGTAGCTGGTGAGGTGTACATATAAGCTGGAGTGCCCTTGAGTCTTGTTGGCACTCCAGCTGATAACCATAACAGCATTGGCTTGTGCGCTTATGCAACATGCAATACTTGGCTAAATACACATCATTGTATTAAGAACGGATAACAtgggtaatattttaaaataaactacagTCTGAAAGTATGCAAAATTGTTAATGGCCAAAATGACCAGTGCTTGAACATCACTTGGGTTTTGTTGGTGCACATGACAGCAAAGCCTACCTCATTTGCTTAAAAGCTGGAAGGCAGTGCAAAATTTGATGGAGGTGGCTGCCCCGTAGTTATCCATGCAGGAAAAAACTCAGATTTTTATTgccaata

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033500 lncRNA upstream 169416 14325056 ~ 14332878 (+) False XLOC_015288
TCONS_00033501 lncRNA upstream 169416 14325154 ~ 14332878 (+) True XLOC_015288
TCONS_00033499 lncRNA upstream 281657 14220028 ~ 14220637 (+) True XLOC_015287
TCONS_00033498 lncRNA upstream 539897 13961129 ~ 13962397 (+) True XLOC_015286
TCONS_00033497 lncRNA upstream 543718 13950269 ~ 13958576 (+) True XLOC_015285
TCONS_00033246 lncRNA downstream 284181 14790803 ~ 14791132 (+) True XLOC_015298
TCONS_00033247 lncRNA downstream 430572 14937194 ~ 14937494 (+) True XLOC_015299
TCONS_00033506 lncRNA downstream 447697 14954319 ~ 14961793 (+) False XLOC_015300
TCONS_00033248 lncRNA downstream 454812 14961434 ~ 14965046 (+) True XLOC_015300
TCONS_00033507 lncRNA downstream 965061 15471683 ~ 15480725 (+) True XLOC_015308
TCONS_00030649 mRNA upstream 561377 13907452 ~ 13940917 (+) True XLOC_015284
TCONS_00030647 mRNA upstream 701698 13721888 ~ 13800596 (+) False XLOC_015283
TCONS_00030648 mRNA upstream 714222 13722116 ~ 13788072 (+) True XLOC_015283
TCONS_00030644 mRNA upstream 781145 13694450 ~ 13721149 (+) False XLOC_015282
TCONS_00030659 mRNA downstream 486257 14992879 ~ 14995050 (+) True XLOC_015302
TCONS_00030660 mRNA downstream 541788 15048410 ~ 15075295 (+) False XLOC_015303
TCONS_00030661 mRNA downstream 562389 15069011 ~ 15075293 (+) True XLOC_015303
TCONS_00030662 mRNA downstream 594120 15100742 ~ 15106968 (+) True XLOC_015304
TCONS_00030663 mRNA downstream 621405 15128027 ~ 15198117 (+) False XLOC_015305
TCONS_00030641 other upstream 1378612 13123566 ~ 13123682 (+) True XLOC_015279
TCONS_00030634 other upstream 2098263 12401255 ~ 12404031 (+) True XLOC_015273
TCONS_00030633 other upstream 2107311 12394623 ~ 12394983 (+) False XLOC_015273
TCONS_00030632 other upstream 2123691 12376822 ~ 12378603 (+) False XLOC_015273
TCONS_00030621 other upstream 2737296 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030650 other downstream 153734 14660356 ~ 14660546 (+) True XLOC_015290
TCONS_00030651 other downstream 158546 14665168 ~ 14665353 (+) True XLOC_015291
TCONS_00030652 other downstream 164375 14670997 ~ 14671173 (+) True XLOC_015292
TCONS_00030653 other downstream 169173 14675795 ~ 14675985 (+) True XLOC_015293
TCONS_00030654 other downstream 206772 14713394 ~ 14713538 (+) True XLOC_015294

Expression Profile

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