RNA id: TCONS_00030651



Basic Information


Item Value
RNA id TCONS_00030651
length 186
RNA type snRNA
GC content 0.47
exon number 1
gene id XLOC_015291
representative True

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 14665168 ~ 14665353 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTATTATACTTGGGCTTACCTCGCGGGCAGTGACAGCGATCGCCTCTTGGAGGTTTCCTGGCTCACAATTACTCCTGTGTTGTGAGCCCTCAACCCTTGAGAGGTAAAGGAATTGCACTTTTTAAGGTAAGAcgt

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000186417

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00033502 lncRNA upstream 158546 14502058 ~ 14506622 (+) False XLOC_015289
TCONS_00033503 lncRNA upstream 158546 14502116 ~ 14506622 (+) False XLOC_015289
TCONS_00033504 lncRNA upstream 158546 14502294 ~ 14506622 (+) False XLOC_015289
TCONS_00033505 lncRNA upstream 158546 14502387 ~ 14506622 (+) False XLOC_015289
TCONS_00033245 lncRNA upstream 160451 14503216 ~ 14504717 (+) True XLOC_015289
TCONS_00033246 lncRNA downstream 125450 14790803 ~ 14791132 (+) True XLOC_015298
TCONS_00033247 lncRNA downstream 271841 14937194 ~ 14937494 (+) True XLOC_015299
TCONS_00033506 lncRNA downstream 288966 14954319 ~ 14961793 (+) False XLOC_015300
TCONS_00033248 lncRNA downstream 296081 14961434 ~ 14965046 (+) True XLOC_015300
TCONS_00033507 lncRNA downstream 806330 15471683 ~ 15480725 (+) True XLOC_015308
TCONS_00030649 mRNA upstream 724251 13907452 ~ 13940917 (+) True XLOC_015284
TCONS_00030647 mRNA upstream 864572 13721888 ~ 13800596 (+) False XLOC_015283
TCONS_00030648 mRNA upstream 877096 13722116 ~ 13788072 (+) True XLOC_015283
TCONS_00030644 mRNA upstream 944019 13694450 ~ 13721149 (+) False XLOC_015282
TCONS_00030659 mRNA downstream 327526 14992879 ~ 14995050 (+) True XLOC_015302
TCONS_00030660 mRNA downstream 383057 15048410 ~ 15075295 (+) False XLOC_015303
TCONS_00030661 mRNA downstream 403658 15069011 ~ 15075293 (+) True XLOC_015303
TCONS_00030662 mRNA downstream 435389 15100742 ~ 15106968 (+) True XLOC_015304
TCONS_00030663 mRNA downstream 462674 15128027 ~ 15198117 (+) False XLOC_015305
TCONS_00030650 other upstream 4622 14660356 ~ 14660546 (+) True XLOC_015290
TCONS_00030641 other upstream 1541486 13123566 ~ 13123682 (+) True XLOC_015279
TCONS_00030634 other upstream 2261137 12401255 ~ 12404031 (+) True XLOC_015273
TCONS_00030633 other upstream 2270185 12394623 ~ 12394983 (+) False XLOC_015273
TCONS_00030632 other upstream 2286565 12376822 ~ 12378603 (+) False XLOC_015273
TCONS_00030652 other downstream 5644 14670997 ~ 14671173 (+) True XLOC_015292
TCONS_00030653 other downstream 10442 14675795 ~ 14675985 (+) True XLOC_015293
TCONS_00030654 other downstream 48041 14713394 ~ 14713538 (+) True XLOC_015294
TCONS_00030655 other downstream 59607 14724960 ~ 14725146 (+) True XLOC_015295
TCONS_00030656 other downstream 102124 14767477 ~ 14767626 (+) True XLOC_015296

Expression Profile


Expression of TCONS_00030651 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.
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Expression of TCONS_00030651 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.