RNA id: TU390015


Basic Information

Item Value
RNA id TU390015
length 1679
lncRNA type antisense_over
GC content 0.37
exon number 4
gene id G344638
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 33516480 ~ 33519692 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAGCTCATTGGTGTGATCTGAGGGAGAGTTCCGCTCTGTTCTCAAGAAAGGCCGGTCCTCACTGGGGCATGGCACCGAGATGATCATATCATTGTTCTCCATGTTCTGCTGGCCTATGGTgggctgcagCAAGTTGGCCCACATCTGTACGGCTAGTTTGTCTGTGTGTAATGCACCCGCTCTGGGGGCAGCGCTAATAAAGGAGGCTGGGTCTGCTGTGATGAAGGGGACATCCTGCAGTAGGACGGTGAAGTCATCTTTGTTGCTGTACCACTGCTTCTCCACCAGGTGTCCGTCAAGGGACTCCTACTGACCACCATGAAATAGAGTTAGGTAAAAATGAACTATGTACAATACACCTATTTAACTGAAATGTTTGTCCACTAAATCCACAGCCAGGAGAGATTAGTGTACAACTTTATTTTTCACTTGTATAGTCCCCTGTGCTACAACCTCTTCTGTTCATATGTTGTTTATTCTATTTTGCAGTATGTCCTGTAAGGAGTTTTTATGATACCATTTTTTTGGTTGAAATCAGACAATAAAATGCAATCTaatcttatcttatcttatttATATGTGGACAAGAGTATAAACAGGACATAGGTCAGGGACCATCAACCAGATTCACCCGCGGGACAATTTTTTTATAAGAGGATGGTCGGTGGGCCAGAACATcgttacaaatcatttgtagactgcaatttGATTGCAAGAAccacaaacagatataatatttgacaaaaacatgataatttcaaaccttgcttacatttgtatatgatcacgtgtctctctattatgcgtgggaatacttgggaaaagatttccaaaattaaattAACTGGTAGGTTTTTTTTGTCCAAacaatttgggggggggggggataaaaccACAGTGGGGCCAAATTCGACCCTGACATAGATGTTGGGGAGATAGGGGAGATCACATTGATGTAAGTTATTGATGTAAGACATTGATGATGTAAGACTGGTGATGTAAGACATTGATAATGTAAGACATAGACATTGATGATGTAAGACATGAATAATGTAAGACATTGATGATGTAAGACATGAATAATGTAAGACATTGATGATGTAAGACATTGATGATGTAAGACTGATGATGTAAAACATGTGTAAGACATTGACGATGTAAGACATTAATAATGTAAGACATTGACGATGTAAGACATTAATAATGTAAGACATTGATGATGTAAGACATGAATAATGTAAGACATTGATGATGTAAGACATTAATAATGTAAGACATTGATGATGTAAGACATTGATGATGTAAGACTGATGATGTAAAACATGTGTAAGACATTGACGATGTAAGACATTGATGATGTAAGACATTGATGATGTAAGACATGAATAATGTAAGACATTGATGATGTAAGACATGAATAATGTAAGACATTGATGATGTAAGACATGAATAATGTAAGACATTGATGATGTAAGACATGAATAATGTAAGACATTGATGATGTAAGACATGTGTAAGACATTGACGATGTAAGAAATTGATGATGTAAGACATGAATAATGTAAGACATTGATGATGTAAGACATGAATAATGTAAGACATTGATGATGTAAGACATGAATAATGTAAGACATTGATGATGTAAGACAGATGTAAGAAATTGATGGTGTACGACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390012 lncRNA upstream 4157 33511574 ~ 33512323 (+) False G344636
TU390011 lncRNA upstream 4157 33511733 ~ 33512323 (+) True G344636
TU389978 lncRNA upstream 73395 33442863 ~ 33443085 (+) True G344606
TU389977 lncRNA upstream 76663 33439535 ~ 33439817 (+) True G344605
TU389953 lncRNA upstream 93399 33422762 ~ 33423081 (+) True G344589
TU390019 lncRNA downstream 5649 33525341 ~ 33527572 (+) True G344641
TU390030 lncRNA downstream 14624 33534316 ~ 33536262 (+) True G344650
TU390039 lncRNA downstream 23137 33542829 ~ 33543028 (+) True G344659
TU390026 lncRNA downstream 32435 33552127 ~ 33553726 (+) True G344647
TU390050 lncRNA downstream 73586 33593278 ~ 33596009 (+) True G344670
LOC110521085 mRNA upstream 40709 33469529 ~ 33475771 (+) False LOC110521085
XM_021600959.2 mRNA upstream 105425 33409113 ~ 33411055 (+) True LOC110522514
XM_021600957.2 mRNA upstream 110511 33404409 ~ 33405969 (+) True LOC110522513
XM_021600956.2 mRNA upstream 114325 33391209 ~ 33402155 (+) True LOC110522512
XM_021600955.2 mRNA upstream 114326 33389873 ~ 33402154 (+) False LOC110522512
XR_002473336.2 mRNA downstream 65253 33584945 ~ 33586386 (+) False LOC110522521
XM_021600970.2 mRNA downstream 113498 33633190 ~ 33636494 (+) True LOC110522523
XM_021600971.2 mRNA downstream 125536 33645228 ~ 33647432 (+) True LOC110522524
XM_021600972.2 mRNA downstream 134368 33654060 ~ 33656575 (+) True LOC110522526
XM_021600973.2 mRNA downstream 149480 33669172 ~ 33673911 (+) True LOC110522527
TU389956 other upstream 26696 33476693 ~ 33489784 (+) True LOC110521085
TU389960 other upstream 30283 33472052 ~ 33486197 (+) False LOC110521085
TU389208 other upstream 812109 32694986 ~ 32704371 (+) True G343958
TU387844 other upstream 1730274 31785865 ~ 31786206 (+) True G342707
TU387645 other upstream 2065004 31451133 ~ 31451476 (+) True G342571
TU390025 other downstream 32435 33552127 ~ 33554003 (+) False G344647
TU390035 other downstream 65286 33584978 ~ 33586311 (+) True LOC110522521
TU391145 other downstream 871281 34390973 ~ 34392263 (+) True LOC110522536
TU391481 other downstream 1017309 34537001 ~ 34539460 (+) True LOC110522530
TU391730 other downstream 1300750 34820442 ~ 34822182 (+) True LOC110522546

Expression Profile