RNA id: TU390026


Basic Information

Item Value
RNA id TU390026
length 1344
lncRNA type antisense_over
GC content 0.47
exon number 3
gene id G344647
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 33552127 ~ 33554003 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTAATCCAGTTTAATCATCCTCAGCAAAAAGGCCAAATACAATAAGAGAAAACAAagttattttttatacatttaactaaatatgcagcgCTATGCTAGTGTGTAAGTAAATCAAAACCATATGGTTAAATACAATTTCTTTTAAGATACAGAAAGATATTAATTTCTTCCATTAGCACTCGCGAGAACAGATTGCAAAATATCAAAATAAAACCAGCCACAACGGTACgctccttttttgttgttgaccactacacatcactccctccatccttcaAATCATCCCTCGCACCAGAAGGGGACCAGTGAGAGTCgaaggaagcagaggagagggggatggagtgaAGAATGAGATGAGCATTGGGACCAGCACAGTCAAGTAGTGTGACTAGGGTAGTAGGAGAAAATATGGAACAGACTAGCAGTATACTACTTAGAATGAACCAACGTATCAGGCATGCATTCTAAGTGGTATTCTATTATGGCCATATGAACAGAGCCATGGTTCAATAGTCCAAGGAGTCAGGGATTTTGTATGTACAGAAGAGGGAGTAGAGTGCATTACAAAACAAAGAGCAGGAACAGCATCACTCATTCAAAGGGCAGCAGGCAGAGAAGAGCTTCTGCTTGTGTGTCTCCAGTCCATTTGTTCAGACTGATCCAACagaggagcggaggaggaggTTGGCTGCAGTACAAAGGTTAGTGGTCTGGTTTGGATTCAAACCACTCTGGCAGAGACTCGTAGGAACAAACACGGCCACAACAACTGACCCAGGACCTGGGGAACAATGTCCTCACTCAACACACAAGCCAATTCAATCCAATGCCATGCAGAGCCATTGGGCAAGGAAAAGAGAAAATAAGGTGGGGGAGTTAAAGGTCGATATCCCACCCTCCTACAACCTGAGGAGTGGTCTAGGGACAGACAGATCTATGTTCCGTTCCTTAGTGACCATTGACATAGTGAAAACCTGCTGACAAAGACAACTAAGGAGCcgGGTCCTTGTTGAATCTGAAGACTGGGCGAGTTAAGGCTGTGAAAATGAACATGCGATAGTGACAGTGTGGCTCCAGAGGTTGCCGTGGTGACAGTGTCCAAGTCAGAGTCCAAACTGTCAAGACTAACAGGAGTGGATCAACAATACTCAGATCCAGAATGTGTGGAGACGGGCGGTCAATGGGAGCAACTCAGGAGCACTCTTCTCCAATGCGCTGGCATGAGCGGCCCACCTTGCGGTCCAGCTTCACCATCTTGAGGACGGCCTCCTCGCGCCCACGCCCCAGGTGGTCGAACAGGCAGTCGTGCTGCTCAGGTAGACGGTGCAGCATGCAGAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390039 lncRNA upstream 9099 33542829 ~ 33543028 (+) True G344659
TU390030 lncRNA upstream 15865 33534316 ~ 33536262 (+) True G344650
TU390019 lncRNA upstream 24555 33525341 ~ 33527572 (+) True G344641
TU390015 lncRNA upstream 32435 33516480 ~ 33519692 (+) True G344638
TU390012 lncRNA upstream 39804 33511574 ~ 33512323 (+) False G344636
TU390050 lncRNA downstream 39552 33593278 ~ 33596009 (+) True G344670
TU390053 lncRNA downstream 46347 33600073 ~ 33600597 (+) True G344673
TU390059 lncRNA downstream 57790 33611516 ~ 33611823 (+) True G344679
TU390065 lncRNA downstream 64215 33617941 ~ 33618240 (+) True G344685
TU390073 lncRNA downstream 75943 33629669 ~ 33630011 (+) True G344692
LOC110521085 mRNA upstream 76356 33469529 ~ 33475771 (+) False LOC110521085
XM_021600959.2 mRNA upstream 141072 33409113 ~ 33411055 (+) True LOC110522514
XM_021600957.2 mRNA upstream 146158 33404409 ~ 33405969 (+) True LOC110522513
XM_021600956.2 mRNA upstream 149972 33391209 ~ 33402155 (+) True LOC110522512
XM_021600955.2 mRNA upstream 149973 33389873 ~ 33402154 (+) False LOC110522512
XR_002473336.2 mRNA downstream 31219 33584945 ~ 33586386 (+) False LOC110522521
XM_021600970.2 mRNA downstream 79464 33633190 ~ 33636494 (+) True LOC110522523
XM_021600971.2 mRNA downstream 91502 33645228 ~ 33647432 (+) True LOC110522524
XM_021600972.2 mRNA downstream 100334 33654060 ~ 33656575 (+) True LOC110522526
XM_021600973.2 mRNA downstream 115446 33669172 ~ 33673911 (+) True LOC110522527
TU389956 other upstream 62343 33476693 ~ 33489784 (+) True LOC110521085
TU389960 other upstream 65930 33472052 ~ 33486197 (+) False LOC110521085
TU389208 other upstream 847756 32694986 ~ 32704371 (+) True G343958
TU387844 other upstream 1765921 31785865 ~ 31786206 (+) True G342707
TU387645 other upstream 2100651 31451133 ~ 31451476 (+) True G342571
TU390035 other downstream 31252 33584978 ~ 33586311 (+) True LOC110522521
TU391145 other downstream 837247 34390973 ~ 34392263 (+) True LOC110522536
TU391481 other downstream 983275 34537001 ~ 34539460 (+) True LOC110522530
TU391730 other downstream 1266716 34820442 ~ 34822182 (+) True LOC110522546
TU391880 other downstream 1520213 35073939 ~ 35074338 (+) True G346334

Expression Profile