RNA id: TCONS_00030667


Basic Information

Item Value
RNA id TCONS_00030667
length 6639
RNA type mRNA
GC content 0.49
exon number 49
gene id XLOC_015307
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 15203322 ~ 15294707 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGCACGGGCCGTCAGATCCGTCTGCTGCTCTGGAAGAACTGGACACTCCGCAAGAGACAAAAGATTCGCTTTTTTGTTGAGATTTTGTGGCCTGTGTTTTTATTCATTGGACTTGTCTGGCTGCGAAGAGCCAATCCCCTGTACCGCCAGCATGAATGTCATTTTCCCAGCAAGGCTATGCCCTCAGCAGGAATCCTGCCTTGGATCCAAGGGATTTTCTGCAACGCTAATAACCCGTGTTTTCGCCATCAAACTCGAGGAGAATCGCCTGGGGTCGTTTCCAACTACCACAACTCCATACTGGCTCGGTTTTACCTGGACTCTCAAGAGCTGCTGTTTAACGACACTGAGTTCCTTCAGCTCGGCCGTCTGTGGCGTGAAGCCTCCATCATGAGCAACTTCATGGAGACTCTACGCACCAGTCCTGAGCGTGTGGCAGGTAAAGGGCTGAAGGTGGAGGACATACTGAAAGACGATGAGACTTTAACAGCATTCCTACTGCGAGACGCGAGGCTTTCAGAAGGTGTTGTGCACGATCTCACTAATGCACAGATTCGGGTGGAGCAGTTTGCGTATGGAGTCCCAGACCTGACACTGAAGGAGATTGCCTGCAGTCAGGCTCTTCTGGAGCAGTTTCTTATTTTCCCCAGTCGTGGAGGGATGTATGGAGTCCAAAATGCCATGTGTGCGCTTTCACAACACAGGCTGCAGAGGATCGAAGATGTGCTCTACGCCAACATAGACTTCTTCAAGCTCTTCCGACTGATGCCCATGGTCTTGGACAGCCACTCCACTGGGATAGACCTGCAGTTCTGgggtcgagtgttgtcagcagtGTCCGACAAGCTTCAGGAGGACTTGATGCAGGTCTTGTACTCCATCTTTCAGCCCGGTGGTCCCTCTTCCTTCAGTCAGCTGATTTCCAAGGTGTCTGATCTGTTTTGTGGATACCCTGAGGGTGAGGGTACCCGCGTCTTCTCCTTTAACTGGTACGAGGACAACAACTATAAAGCTTTCCTTGGCATCAACAATTCCAGGGGACACGACAGCTACATCTATGACAAAACAGCAACTCCATTCtgtaatgcattaatgcagaACCTGGAGTCAAACCCTATTACcaaaattgtgtggaactcagtgAAGCCTCTTGTGATGGGGAAGATCCTGTACACTCCAGACTCTCCGGCTGTCAGAAAAATAATAAAGAGTgCCAACACCACTTTTGAGGAGCTTGAGAGGTTGCAGAAAATAGGGAAGGTCTGGGAAGAGCTGGGACCACAGCTCTgggatttctttcaaaacagcatcCAAATGAACATGATACGGGACACACTTAGGAACCCCACAGTGATGGACTTTTTGGACAGGCGTCTTAGAGAAACAGAGTTCTCCACCAAAGACATCCTCAACTTCCTGCACAATGGCCCAGAGGGGGAGAGATTCATGAACATGACAAGCTTTGACTGGAGTGATGTCTTCAGATTGGCTGACCAGGCTATTCGGATGTTTAACCGCTACAGTGAGTGTATAAGTCTGGATAAGTTTGTGGGTCACATGGATGAGAATCTGATGACCCATCAAGCTCTGCACCTGCTAGGGGAGAATAAGTTCTGGGCCGGTCTGGTTTTCATGGACATGTACCCCTGGACCATAGAACTACCCCGACATGTCAAGTTCAAGATCCGAATGGACATTGATGCAGTGGAACGTACCAACAAAATCAAAGACAGATACTGGGACCCTGGCCCACGGGCAGACCCTGTGGAGGACCATCGCTATATCTGGGGAGGTTTTGCCTACCtgcaggacttgattgaacacggGATCCTTAAATTACACACAGGTCATGACTGGCCCTTAGGTGTTTACctgcagcagatgccctacccCTGCTACGTGGATGACATGTTCATGCTGACCCTAAACCGCTGTTTCCCCATCTTCATGGTGCTGGCCTGGATCTACTCAGTGTCCATGGTTGTGAAGAGCATTGTCCTGGAGAAGGAGATGAGGCTGAAGGAGACTCTGAAGGCCATGGGCGTCTCTAATGGAGTCATCTGGTACACATGGTTCATTGACAGTTTCATTATGATGACCGCCAGCACTGCTCTGCTGACTGGCATTGTCATGGCTGGAAAAGTGCTCAATTACAGCAATCCGATCATTCTGTTCCTGTTCCTCCTCACATTCACCGTGGCCACTATCATGCAGTGCTTTCTGATGAGTGTTTTCTTCAATAAGGCCAACTTGGCTGCTGCTTGTAGCGGCATTATTTACTTCACCCTTTACCTCCCTCACATCTTCTGCTTCGCCTGGCAGGATCGCATTACCAAGGACATGAAGTTAGCTGTGAGCCTTCTGTCTCCAGTGGCCTTTGGGTTTGGGACAGAGTATCTATCCCGCTATGAGGAGCAAGGCCTGGGTCTGCAGTGGGACAATATTGGCACAAGTCCTCTAGAGGGGGACGAGTACTCCTTCTTCACTTCCATTCGCATGATGCTACTGGATGCAGTTCTTTATGGTGTTTTGGCTTGGTATCTTGACAACGTCTTTCCAGgTCAGTATGGTATTGGTCGGCCATTTTATTTCCCCCTGCAGTCCTCGTACTGGCTGAAGCCATCACCACCCTCAGAGACTTCAAATGCTggtataaatgaatattttagctCTGAACAtcaagtttgcaacatcaaataTAGGTTTGAACTAGATCTGCCAGAATGCAACGGATCCCGCAACAGCAAACACTGCAAACACAAGGAGAAACGAGAGAggatggagaaagagagagagcgagaggagCAGTTGAAAATGCAGGAGGAGATTCAGCAGGAGGAGATCCAGAAAGACCACCACCTTGTGCCTTACATTTATGGAAGAGACATTCGTACAGAGATGGACGCCATACGACAGTCACTGGGCATGTGTCCACAGCACAACATCCTCTTCAAACATCTGACGGTGGAGGAGCATATTCTCTTCTACTCTCTGATGAAGGGCCGTGAACACAAGGAGGCCGAGCAGGAGGTCGAGAACATGCTGGAGGACTTGGGGCTGCCTCATAAACGGGATGAGGAAGCACAGAACCTCTCCGGTGGTATGCAGAGGAAGCTGTCAGTGGCGATGGCTTTCGTTGGAGGCTCTAGGGTGGTGATACTGGATGAGCCGACCTCAGGTGTAGATCCTTACTCCAGACGCTCCATTTGGGACCTGCTCCTCAAATACCGCACAGGACGCACAGTGATACTGTCCACTCATCACATGGACGAGGCAGACCTgttgagtgacagggtggccatCATCTCTAAAGGCAAACTGCACTGCAGTGGTTCTCCTCTATTTCTGAAGAACTGCTTCGGTGTCGGTTTCTACCTCACCCTGGTGAGACGCATGAAAGACCAGCGCAAGAAGGAGAATGAGTGTGACTGTGCATCTGAATGTtcctgcacctgctccacctgcactAGATATAAAGAGGAGAGTCAGGCTCTACAGCCCGAGAGAGTACTGGATGGGAACGTTGAAAGCATCACTACTCTGATTCATCACCATGTACCGGAAGCGAAGCTGATTGAAATGATCGGTCAGGAGATGACCTATCTGCTGCCAAATAAAGGCTTTAAATATCGAGCGTACGCCAGCCTTTTTCGAGAACTGGAGGAAACGCTGGGTGACATGGGCCTCAGTAGCTTTGGCATATCGGACACATCACTGGAAGAGATCTTTCTGAAAGTTACAGCAGATGGAGAGGCAGCCAACAGCTCTATTATGTGTGTATCTGGTCTGGTTACAGATGCTAACGGTGTGGGAGCCTCACTGGAGTCTGACAGCAGTGAAGGTAGAGCCTCCAGACAGGTTAAGGGCTTTAGTTTGGTCCTTAAGCAGTTCCACGCTCTTCTAGTCAAGAGGTTTCATCACGCCACACGCAGCCACAAAGACTTCCTAGCACAGattgttTTGCCAGCCAGTTTTGTCCTCATTGCTCTGGTCTTCACTATGATTGTGCCACCATTCGGGGAGTACCCCTGTCTGACCCTCACACCATGGATGTATGGACCACAGTTTACCTTCATCAGTAATGAGCAACCGTCACATCCAAAGATGAAGCACTTCATTCAGACGCTGCTGAAGGACCCTGGCATGGGAACCCGCTGTATGGCCAATCAGCCCTTAGAGAACATCTTTACCTGCTTAAACTCAAGCTCAGATTGGGAAGTTCCTCCAGTGTCTCCTGAGGTCAGCAACATCTTATCAAGTCCTGAATGGGATAGCAGAAACCCATCCCCATCCTGTGAATGCAGCACTGATTTGAAGCTCACTATGCTGCCAATGTGTCCTGCTGGAGCTGGAGGACTGCCACCACGCCAGAGAAAAGAGCCAACAGGGGACATTTTGCTCGACATGACAAACAGAAATATCTCTGACTACTTGGTAAAGACTTACACAAAGCTCATCAAGACCAGCTTGAAGAGCAAATATTGGGTGAATGAGCAAAGGTATGGTGGAATCTCTGTTGGTGGAAGACTGCCGATTCTTGATGTGGACCCCGAGGAGATCCAAAACATTTTCTCTCAGCTTGGAAGAATGATGAATATCAGAGGGGCATTTAATGTCTTGCTCTATGTGTGGTATAATAACAAAGGCTGGCATGCCATGGCCTCCTTCCTGAACGTAGCAAACAATGCCATTCTCCGTGCATATCTGCCACCTCATGCCAACCCATCAGACTACGGAATTACTGCCATCAATCATCCTCTCAACCTCACCAAAGAGCAGCTCTCAGAGGTCACTGTTCTCACCACATCAGTGGATGCAGTGGTGGCCATCTGCGTCATATTTGCCATGTCCTTCATCCCAGCCAGCTTCGTCCTCTACCTCATTCAGGAACGAGTCACCAAGGCCAAACATCTGCAGTTTGTCAGTGGAGTCAGTCCTTTGGTCTACTGGTTTGCCAACTTTTTCTGGGATATGTTGAACTACTCGGTCAGCACAGCAATGGTTGTGGCCATTTTTGTGGGATTTGATAAGAAGTGCTATACATCACCCACCAATCTACCAGCGCTGATCGCTCTGCTTTGTCTCTATGGGTGGTCAGTGACACCCATGATGTACCCGCTATCCTACATGTTCAATGTCCCCAGTACGGCATACGTGTCCCTCTCATGCATCAACCTATTCATCGGTATCAACAGTAGCGCCATCACCTTCATCTTAGAGCTATTTGAGAACAACAGGTCTCTGCTGATGTTTAATGAGGTGTTGAAGAAGGTGTTACTGGTGTTTCCTCACTTCTGTCTTGGCCGAGGTCTCATTGATATGGCCATGAACCAGGCTGTGACTGACGTTTATGCTCGATTTGGAGAGGAGTTTTCCATGGATCCGTTCAGATGGAACTTTGTGGGGAAGAATCTCTTCTGTATGGCTGTGGAGGGTTTTGTCTATTTCATTTTTAACCTCCTCATCCAGTACAAATTTTTCCTTCATCACTGgATATCAGACTATGGGATGAGCCTAGGtacagatgaagatgatgatgtaGCTCAGGAGAGAGAGCGCATTTACAAAGGGGGGAATAAAAATGACATCCTTCTAATCCGAGACTTGTCAAAAACCTACAGGCGCAGAAAACGACCAGCAGTGGACAAAATCTGTGTAGGAGTTCCAGCGGGGGAGTGCTTTGGGCTTCTTGGTGTAAATGGTGCAGGTAAAACCACAACTTTCAAAATGCTGACTGGAGACACAGATGTGACATCAGGAGAGTTGTCTGTAGCAGGATACAGCATTCTTTCCAACATCCTGGATGTGCACCAGAACATGGGCTATTGTCCTCAGTTTGATGCCATAGATGAGTTGCTGACGGGTAGGGAACACCTGTACCTTTATGCTCGCCTTCGTGGGATCCCTGAGTCTGAGATTAGCAGAGTGGCAGAGTGGGGCATTCAGAAGCTGGGTCTTTCTGAATATGCAGGAAACTGTGCTGGTACCTACAGCGGGGGCAACAAAAGGAAGCTGTCTACTGCTATAGCGATGATTGGATGTCCTCCTCTGGTGCTcctgGATGAGCCCACAACAGGAATGGACCCTCATTCCCGTCGCTTCCTGTGGACTGCCATTCTGAGCATCATCCGGGATGGGAGGGCGGTCGTTTTGACCTCTCACAGTATGGAAGAGTGTGAAGCTCTCTGTACTCGCTTGGCCATCATGGTCAATGGGACATTTAAGTGTCTGGGCACAATACAGCATCTGAAATACAAGTTTGGAGGAGGCTATGTAGTGACAATGAAGATCAAAGCCGCAAAACCAGGCCTTTCTCCAGACCTGGTCCCGGCAGAGTCCTTCATGGACAGCAGTTTCCCAGGATGCATCCAGCGAGAGAAACACTACAACACGTTACAGTATGAAATCGCAGCTGCCTCGCTAGCACGGGTCTTCCAGCTAGTGTTGACCAACAAAGAAAGACTGAACATAGAGGATTACTCTGTGTCGCAGACTACATTAGACCAGGTGTTTGTGAATTTTGCCAAGCAGCAGTCAGGAGAAGACGACACCGCCCCATCACATCTCAGACAGTCAGGGCCCAAACGAGAAAAAAAGGTCTCGCCGCTACAAAGAGTCGCAACAAAAAACAGATGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006869 lipid transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005524 ATP binding molecular_function
GO:0005548 phospholipid transporter activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0005319 lipid transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050517-4 Predicted to enable ATPase-coupled intramembrane lipid transporter activity; ATPase-coupled transmembrane transporter activity; and phospholipid transporter activity. Predicted to be involved in lipid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in fundus dystrophy and retinal degeneration (multiple). Orthologous to human ABCA4 (ATP binding cassette subfamily A member 4).

Ensembl:

ensembl_id ENSDART00000090760

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033248 lncRNA upstream 244630 14961434 ~ 14965046 (+) True XLOC_015300
TCONS_00033506 lncRNA upstream 247883 14954319 ~ 14961793 (+) False XLOC_015300
TCONS_00033247 lncRNA upstream 272182 14937194 ~ 14937494 (+) True XLOC_015299
TCONS_00033246 lncRNA upstream 418544 14790803 ~ 14791132 (+) True XLOC_015298
TCONS_00033245 lncRNA upstream 704959 14503216 ~ 14504717 (+) True XLOC_015289
TCONS_00033507 lncRNA downstream 177321 15471683 ~ 15480725 (+) True XLOC_015308
TCONS_00030670 lncRNA downstream 329331 15623693 ~ 15626967 (+) True XLOC_015310
TCONS_00030674 lncRNA downstream 539191 15833553 ~ 15844036 (+) True XLOC_015312
TCONS_00030678 lncRNA downstream 866620 16160982 ~ 16166102 (+) True XLOC_015314
TCONS_00030683 lncRNA downstream 883053 16177415 ~ 16191890 (+) False XLOC_015315
TCONS_00030663 mRNA upstream 11559 15128027 ~ 15198117 (+) False XLOC_015305
TCONS_00030664 mRNA upstream 11756 15128418 ~ 15197920 (+) True XLOC_015305
TCONS_00030662 mRNA upstream 102708 15100742 ~ 15106968 (+) True XLOC_015304
TCONS_00030660 mRNA upstream 134381 15048410 ~ 15075295 (+) False XLOC_015303
TCONS_00030661 mRNA upstream 134383 15069011 ~ 15075293 (+) True XLOC_015303
TCONS_00030668 mRNA downstream 292270 15586632 ~ 15589991 (+) True XLOC_015309
TCONS_00030669 mRNA downstream 318393 15612755 ~ 15626972 (+) False XLOC_015310
TCONS_00030671 mRNA downstream 481794 15776156 ~ 15945153 (+) False XLOC_015311
TCONS_00030672 mRNA downstream 482046 15776408 ~ 15945153 (+) False XLOC_015311
TCONS_00030673 mRNA downstream 482287 15776649 ~ 15900187 (+) True XLOC_015311
TCONS_00030665 other upstream 36293 15173267 ~ 15173383 (+) True XLOC_015306
TCONS_00030658 other upstream 238657 14970007 ~ 14971019 (+) True XLOC_015301
TCONS_00030657 other upstream 429601 14779104 ~ 14780075 (+) True XLOC_015297
TCONS_00030656 other upstream 442050 14767477 ~ 14767626 (+) True XLOC_015296
TCONS_00030655 other upstream 484530 14724960 ~ 14725146 (+) True XLOC_015295
TCONS_00030675 other downstream 574063 15868425 ~ 15868540 (+) True XLOC_015313
TCONS_00030677 other downstream 866581 16160943 ~ 16161569 (+) False XLOC_015314
TCONS_00030714 other downstream 1530397 16824759 ~ 16824819 (+) True XLOC_015329
TCONS_00030715 other downstream 1535327 16829689 ~ 16829764 (+) True XLOC_015330
TCONS_00030726 other downstream 2363596 17657958 ~ 17658076 (+) True XLOC_015342

Expression Profile

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