RNA id: TU391158


Basic Information

Item Value
RNA id TU391158
length 3886
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G345681
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34429810 ~ 34524839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAACGTCAGACAGGTCCCATTTCATTTATTGGGTCAAAAAGAGGTGTTAAGGTCATTGAAGTTCTCATTAAAAACAGTACAAATCTCATGTGAACATTGACACTAAACAGAGCTTCAAGAACTGTTCTAAGACTATGTTAAATAGTCAGCATTTCTAGGAATAACATCAGTTCATGGTTTCAACTCCATGATCAGAATATAAAAAAAAGGTAGTTTAGGCACTTATCAACTCATCTAGATTCTAGCCAATCGTTCATCAGATCACcaacagtaatatagcaacagAAAGCATGCAGTGCCATTTTAGGATTTGTCTCCTTAGTTAACTGCCACAATTAAGTATCATTCAGATACGAGTAGTTGAAAGACAGATTAGGCTTCCCTCTCATTCCATGACAGGTTAAGCATGAAGTGGGACATGTTGTCCCAGCTGATAAATTGAtatgctttatttatttattagtgTTGTGTACAATAAAAACACTATTAGGTATCGAAAGAAATTCAACAACCACAGGCCTACGCAAGAGCACTCAACCTTACAACAAGCCTTTGTGACCCTCATCACTCACCAACTCAGAAGTCTCTTCTCGGCAGTGGCCTTCTGAACCGTCATCACATGAACCTCGTCCCCAGGCTCAATTGCTACCACATAGAGAGCCGGCTGTGTGGACGAGATTATGCTCACACACGCAATCCTTCAGTCAACATTCCATATCTTGCTTACAACCTCACCTAGAAGAGCCCTGGTCTACATACACAAACCCACCATTATACCAGCTGCACTCAAGTCTCCGACACGGAACCAGCAATTAAAGATTAAAAGGTCATGAGACATGTAATTACGATACACATGGTGCAACAGACAAAAACACACGACACATACGTGACAAGACCGGGGATCAATGACTCACACATGATTAGACAAAGACAATAGACAAGGATCAGATAGATTATCAACTTGAATTTGGAATAGTGATTAGTGACTAATCAATGGTTTGAATAATGATTAGTGACTAATCAATGGATGATGCAAGCAGGGAGAGGGTAGTGGAGGAATTTAGCAGTGAAAAATAGAAAAAAATTAAAGCAAAACCAATTATTGTGCAATATAGGAATCCATACAATAGTCATATTTAGAAAGTGCCAAGAAATCAAGACTATACTTACTAAAGCATCACCAtgcaaagaaaacaaaaaaacatttcaccAGGTGTTCCTCATACCCCTGCACCAGCTAACACAAAACTAAGGCAAAAACCTGAAACAGCcacttacacacacacacacacacacgtcagttgGTTCCATGAGGAGCCGCGTTTCTTCTCAGTCTCCCTACCCCGCAGACTCAAGGCTAGCCTTTGTTATTTTAGCAGGAGGTTTGGACACAAAGTCGCCAGTCAGCTAGCCGCAACCTCATAGAAGAGCCATTCTCTACTGTAGCGGAGAGAGGTGTTACAGAGGACAATTGACAATCGCCTGAGAGAGGATTATAAAGGAGAATGTAAAGGATACAACCATAGGCCTGCCACTAAGGGTTGTCCTTATATTATTGAAGGTTGTTTTGTCCCCTTACCTCCAGCCTGAGGACTGCTTTGTTTTGAAGCCATCACCTTCTTCACGCGGTTGAAGAAGACCTTGCAACGGTAGATGACCAGATTCACAGTGCAGGCATCTGTTAGAATGACACCCAATGAGACTGATAAAAGCTGTATCATAATCATGATCAATAGGGCAAATAGACAGTACAGAATCAAACAGGAAATTGGAGTCCATGCCATATCATGAGGATAAACCACTCCTACGGTCTCAGAATAATGCAAACTGATAGCTGGTCAATATTGCGCCCTAACACTTCCCCTAGGTCAATGCACGTCGATCTGCAAACATGGAAGTGTTAGGACCAAGGGGAAGGGAGTGAATTGGGACTGACTGTTGACAGACTACGCTTCTCCTTTCACACCCCTTTACCTCCTGTGAGTTTGGACTGACAGTTGACAAATTCAGTCTGGCGGGGCCTGGGACCCACTGTGCTCTTCCGTCTAGCCTGGGCCCCTGGACCTCCTCTTTGGCCCCCTTGGAATCCTGggctaaccggtgcccctggaCTAGCTCTCTGGTCCTTCTGCTGGTCTCCAGCTGGGCTACCCAGGCCACCAGGGACCCGCTCCTTGCCCTCCCAGTAAGTCTGACAGGCGTGGTACATGATCTGGATGAAGATGCACTTCTCTGCCGCTGAGCTGGCCACCCATTGGTCAAATGCGTTGTCAAATACCAGGTCAAACTCTGGGCAGTCCTGTGGGAGATTACAGAAGGGTATACAGATGAGGGATACGATAGAGAGGTCACAAGACAGTAGAGGAGAATAGTGGACCAAACCAATCGCCCAGAAACACATGGGTCAGAATCCTGGTGCTCCAATCCCAATTCAACCCTTTATCCATCAAGACCTGATTGGCTCTACTAGTCTAATTAGCCCCCAAACCGCACTGATTCTCATCCATTCTGCTTTGGGAAACTGAACATGGCAGAGGGGGctaaggagagaggaaggaaatggatgatgaatggatacaggGCTTCCAGAGAATCTAGGCAGTACAGTACCACACAGAATATCACATCTATACCATCTCTATGATGACGTCACCTTGTTGGGGTCGATGCCATCGACCTGGCGGAGCTGCTCCACGCTCCACTGTGACCTCCTGGTGAAGGGGGCAGAGCCTCCAAACTGCTTGACCTTGGTGATGAGGAGCTGGGCTGGTCTCTTATTGGTCACTGGGGGATTAGGAGGGGTCATCGGTTAGAAATATGAAACCAAAGCACAGTCATATAATGTAAAAATAGCAAAGTAAATCTACACAGTACTACAATGAAGACAGGATATAAAGAAGAGATTTAGGATTCACTTTCCACAACTAAAcgtgtgtttattttattttttacaaacatTGGACACACACCGGACCAGTCACCATCACAGATCAACAAACAGACCGCCAATGCCCATTCTTCTTCAGTGGATTCTCTTGTTCAAACGATATGAGGGGTTGTAATGGGGGAGACTGGCAGTGCCAGCTGAGGACACTAGTCACTCTTCCGTCTGTGGTGTAATTGGGACGGGGTGAAGAGTCCCTCGAGGGACACTGGGGCAGTGAATGCCCATGACTCTGGGTGACTTCATCACAGTAACAATAGCTACTATGGATGGAGAGTGAGTGACACTGAACATCTAAATAATATGCAAGTGATCCTTCCTGCTCAATTATAGGATCCATGTCCTCTGACAACGTCAGACTCAGTGGTATTAGATAGCCAGCATCACAATGTCCTGACTGCAACACAATGAATACCTCTGCATCCTTCCAGTCAGATAATTCCACCATGAGATGGTTAAACAATGTAGCCTTTTAATCCTGAACAAGAGAgttgtatatacacacagcagaTCAACAAGTCCTGGATTTAAAATTCAAGTCACAATGGTCCCAGCTGAGAGAAATATGTTACAGGAGCCTACCTGACAGACAGATGTACGTCATAGAGAAATATGTTACAGGAGCCTACCTGACAGACAGATGTATGTCATATATTCTCCCTTGCCTCCAGTGGGCAGAAAGGGAACCTTTTTCCTTTTTCTCCTCTTAACCTCCACAGCCACTAGTATCCTCTCATCCCGGGGGGCAAACACTTCCCTGTTGATAACTGACTGGATATTCATAGTGATCTTTTTTTGTTGTTTTACTCCACCAAGATGCAGAAACAGCTAGGCTGATTACCAAACGACTCGACTGGCTTGTATAACTGTCAGGCTACCACCTCTAATCAACCGCCACAAGGTTTACAATCCGAGTTAAATTTCTACTCTAGAGCATTGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391135 lncRNA upstream 64206 34365162 ~ 34365672 (+) True G345658
TU391125 lncRNA upstream 86228 34343435 ~ 34343650 (+) True G345648
TU391124 lncRNA upstream 86495 34343174 ~ 34343383 (+) True G345647
TU391104 lncRNA upstream 123352 34301632 ~ 34306526 (+) True G345634
TU391108 lncRNA upstream 124393 34300560 ~ 34305485 (+) False G345634
TU391164 lncRNA downstream 515 34436713 ~ 34438451 (+) True G345682
TU391172 lncRNA downstream 2885 34439083 ~ 34441745 (+) True G345688
TU391489 lncRNA downstream 127585 34563783 ~ 34564321 (+) True G345967
TU391490 lncRNA downstream 129870 34566068 ~ 34566283 (+) True G345968
TU391526 lncRNA downstream 180600 34616798 ~ 34617208 (+) False G346002
XM_021600986.2 mRNA upstream 32174 34394320 ~ 34397704 (+) True LOC110522537
XM_021600985.2 mRNA upstream 35703 34390869 ~ 34394175 (+) False LOC110522536
XM_021600983.2 mRNA upstream 65623 34357090 ~ 34364255 (+) True LOC110522535
XM_036976143.1 mRNA upstream 91005 34318513 ~ 34338873 (+) True LOC110522534
XM_021598431.2 mRNA upstream 200606 34226453 ~ 34229272 (+) True LOC110520988
XM_021600992.2 mRNA downstream 18994 34455192 ~ 34459207 (+) True LOC110522540
XM_036976146.1 mRNA downstream 100752 34536950 ~ 34541410 (+) False LOC110522530
XM_036976147.1 mRNA downstream 100984 34537182 ~ 34541410 (+) False LOC110522530
XM_036976148.1 mRNA downstream 101009 34537207 ~ 34541410 (+) False LOC110522530
XM_036976151.1 mRNA downstream 183702 34619900 ~ 34627191 (+) True LOC110522544
TU391145 other upstream 37615 34390973 ~ 34392263 (+) True LOC110522536
TU390035 other upstream 843567 33584978 ~ 33586311 (+) True LOC110522521
TU390025 other upstream 875875 33552127 ~ 33554003 (+) False G344647
TU389956 other upstream 940094 33476693 ~ 33489784 (+) True LOC110521085
TU389960 other upstream 943681 33472052 ~ 33486197 (+) False LOC110521085
TU391481 other downstream 100803 34537001 ~ 34539460 (+) True LOC110522530
TU391730 other downstream 384244 34820442 ~ 34822182 (+) True LOC110522546
TU391880 other downstream 637741 35073939 ~ 35074338 (+) True G346334
TU392774 other downstream 1397171 35833369 ~ 35833844 (+) True G347151
TU392802 other downstream 1472048 35908246 ~ 35908451 (+) True G347178

Expression Profile