RNA id: TU391172


Basic Information

Item Value
RNA id TU391172
length 2593
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G345688
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34439083 ~ 34441745 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catttgctccgttccatcCGTTATAAGCCGTCCCCTCAGCAGCCGCCACTGTTCCCTAGGGTACAGTACTTCATTTTGTCTTCAATTACAACTCTATGCGAAATTAAGAGAAGACATCGATGTCACTTACACGTTATGGCACATGAATGGGTGAATTGTATCCTAAGGACGATGAACCTATCATCTCTATAAGTGTAACAGTGacaacatcccactgggcacacactggttgaatcaatgttgttacCACggcatttcaatgaaattacgttgaaccaacgtggaatagacgttgaattgacgtctgtgcccagtgggacaaCATGTAAACAAGGATATGCCGAACCAAGGAGAGAACCATGGGTAAGACTCACTAAGAGGTTTCTCAATACCCTTTCATACTACAGAACTAAACTATGCTGTGTTGTACTGGCCTGGTCTGGTTATGCATCCGCCATAGCTGTTAGAACCATGCtagaaaggacaatgtgaaaataaaatatcTGTGCCAGCACAGTTTGATTTGGATCGGCCCTATAGTGGGAACCAGGTGTTAGAGCAAAGGCATGGGGGTGACAGAGTAGAATACCAAGGAATCTAACAGTCTGATCTAACAAGGGAGGCGTTCAAACACATCTGAGGAGAAATGAAATAGCTAACATTCACAAGACAGTAAAAAGTCATCCTAACAGAtactgtgtttaaaaaaaaaaactctgctgTGTTTACACAaatcatataaaaaaaaaaactcctgaTGGCAAGCTTTATTCTGGCAGAGATCTGATGTAAGTGATGTCATTCGATGTTAGTGTAATTACTTTGCTAAAAGCTTTTAACAAATGAGCCTGCGTGCTGTAATCCCTCACTAACAGCAAGACAtgttttaaacctttatttaactaggcaagtcagttaataacaaattcttatttacaatgacggccaaacccggacaacgctgggccaattgtgcggcacCCTatggggactcccaatcacggccggatgtgattcagcctggattcaaaccagggactgtagtgtcaggtcttgagatgcagtgccttagaccgctgctccactctggagCCCAAGCAAAGCATATTCCTCCCTGTCTATGTACATACCGCATGCTATGTTTTCATTTTGACCCACATCATTATTGATTCTAATAAAGTATATTGTATTAGTACAGTTTATTGTCCTGTCCTCTCCAATGCAACTCTCTTTAGTTACTTGGatgtaaataaaacatgttgCATGGGTCCTTCATGCCTGTGTTCCTCTTGTTTTACTGATATGTTGTCTGTTTGTTGCCTGACTAGAAAGTTACTGCGTTATGTGCAACATGTCAGCGTTAGTAGTACAAACGGATATAGTAGTGCTCTGTTGGATCAAGACAATTCACAGCAGAACTAAAACAATTCTGTGGTCTTCTGATGGATGGATCAGCCAAGCGACCGAACCTGCCATTAGGTTATGAGACATAAGCAAATAACTGTATTTGGCAACTTTGCTCAAGTTGTCTACTCAACATAAACATCTTTCCATCATCCCTTATAGAAATgttcagttagttagttagtgtaaACATGGTACCTCAACATATCATCATCCTAGCAGTACAGGTAGTCTATAGAGCTACATTCTATTTACTCTACCACATGCTCGGGTCCAATGACCTCATCCAAGCAGCATTAACCCTAGCCTGGTCAAACCAGACTGAACGGAAAAAACTATGTTTAACCAGGCTACTTCAAACCTTCTGCAACAATCCACTTTGATCCACCTAACGGGTTGAAATCAAATGAAACCAAATGGGTTTCAATGTTCTGAGGGATGGATTTGGATGTAACGCTCTCAACAGGCTAAACATCTAAATGAGTGTTGATGCTGGGAGTTGTGAGAGGAGAGGTTGGGCTAGAGGCATGGCTACAGTTTCAGGAGTCACACAAACCCACTCAAAGCTGTGTCCGACACCAACACAGTCAATGCCAAGTCCAAGATAATGAACACTGACAGATGCTTGGTCCTAGAGGCATCATTTAGTCACAGGAAAGAGGAACAGTCTTCGCTGAGGTTGGTGCGTGCCTGGGGGGTAAAGTCTTCAATAAACCCACAGGGTGGGTATATGAGGAACAGTCACTATTAGGACCATAGGGTAAAGGGTACGGTCATTGACGGGATGACCACAGGCTGGCCACAGGCTGTGAAGTGGTCTCTGATACACAGTTATGTCTAATCGGTCTGGTCGCAAATCTTTGTGTGTACACTGGGATACTATTACATGTGTTGAGGGAAAGGGAaaaatagtgtgtgtgtctccctctgtgtgtgtgcgtgtctctgtgtgtgtgtgtgtgtgtctctctctctctgtgtgtgtgtgtgtgttttggctgTGGGTTAGGATAACTCTGGGTTATCCTCAGAGAGCTGAGTGGGATACCCCTGTCTATACATGAAGGTGAGAAGAAACAGTGCCACGTCGTGTGAACACCAATAGGCTGTGTGCGAGGTCACCGCCGACCAATAGCGGCTCTCCACCATGCCTTCTCGCAGCTCAAAGTCAATGCGCCTCTCCAACTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391164 lncRNA upstream 632 34436713 ~ 34438451 (+) True G345682
TU391158 lncRNA upstream 2885 34429878 ~ 34436198 (+) False G345681
TU391159 lncRNA upstream 2885 34429878 ~ 34436198 (+) False G345681
TU391160 lncRNA upstream 2885 34429878 ~ 34436198 (+) False G345681
TU391135 lncRNA upstream 73411 34365162 ~ 34365672 (+) True G345658
TU391489 lncRNA downstream 122038 34563783 ~ 34564321 (+) True G345967
TU391490 lncRNA downstream 124323 34566068 ~ 34566283 (+) True G345968
TU391526 lncRNA downstream 175053 34616798 ~ 34617208 (+) False G346002
TU391527 lncRNA downstream 175053 34616798 ~ 34617067 (+) True G346002
TU391530 lncRNA downstream 175593 34617338 ~ 34617753 (+) True G346003
XM_021600986.2 mRNA upstream 41379 34394320 ~ 34397704 (+) True LOC110522537
XM_021600985.2 mRNA upstream 44908 34390869 ~ 34394175 (+) False LOC110522536
XM_021600983.2 mRNA upstream 74828 34357090 ~ 34364255 (+) True LOC110522535
XM_036976143.1 mRNA upstream 100210 34318513 ~ 34338873 (+) True LOC110522534
XM_021598431.2 mRNA upstream 209811 34226453 ~ 34229272 (+) True LOC110520988
XM_021600992.2 mRNA downstream 13447 34455192 ~ 34459207 (+) True LOC110522540
XM_036976146.1 mRNA downstream 95205 34536950 ~ 34541410 (+) False LOC110522530
XM_036976147.1 mRNA downstream 95437 34537182 ~ 34541410 (+) False LOC110522530
XM_036976148.1 mRNA downstream 95462 34537207 ~ 34541410 (+) False LOC110522530
XM_036976151.1 mRNA downstream 178155 34619900 ~ 34627191 (+) True LOC110522544
TU391145 other upstream 46820 34390973 ~ 34392263 (+) True LOC110522536
TU390035 other upstream 852772 33584978 ~ 33586311 (+) True LOC110522521
TU390025 other upstream 885080 33552127 ~ 33554003 (+) False G344647
TU389956 other upstream 949299 33476693 ~ 33489784 (+) True LOC110521085
TU389960 other upstream 952886 33472052 ~ 33486197 (+) False LOC110521085
TU391481 other downstream 95256 34537001 ~ 34539460 (+) True LOC110522530
TU391730 other downstream 378697 34820442 ~ 34822182 (+) True LOC110522546
TU391880 other downstream 632194 35073939 ~ 35074338 (+) True G346334
TU392774 other downstream 1391624 35833369 ~ 35833844 (+) True G347151
TU392802 other downstream 1466501 35908246 ~ 35908451 (+) True G347178

Expression Profile