RNA id: TU391526


Basic Information

Item Value
RNA id TU391526
length 411
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G346002
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34616798 ~ 34617208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aattggcttcctatttcgcaacaaagcatccttcactcatgctgccaaacatacccttgtaaaactgaccatcctaccaatcctcgacttcggcgatgccatttacaaaatagcctccaataccctactcaacaaattggatgcagtctatcacagtgcaatccgttttgtcatcaaagccccatatactacccaccattgtgacctgtacgctctcgttggctggccctcgcttcatactcgtcgccaaacccactggctccatgtcatctacaagaccctgctaggtaaagtccccccttatctcagctcgctggtcaccatagcatcacccacctgtagcacacgctccagcaggtatatctctctggtcacccccaaaaccaattttttctttggccgcctctcctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391490 lncRNA upstream 50515 34566068 ~ 34566283 (+) True G345968
TU391489 lncRNA upstream 52477 34563783 ~ 34564321 (+) True G345967
TU391161 lncRNA upstream 91959 34429878 ~ 34524839 (+) True G345681
TU391172 lncRNA upstream 175053 34439083 ~ 34441745 (+) True G345688
TU391164 lncRNA upstream 178347 34436713 ~ 34438451 (+) True G345682
TU391530 lncRNA downstream 130 34617338 ~ 34617753 (+) True G346003
TU391567 lncRNA downstream 65657 34682865 ~ 34683139 (+) True G346040
TU391581 lncRNA downstream 95410 34712618 ~ 34713059 (+) True G346054
TU391714 lncRNA downstream 110485 34727693 ~ 34727932 (+) True G346175
TU391727 lncRNA downstream 144665 34761873 ~ 34800749 (+) True G346186
XM_036976146.1 mRNA upstream 75388 34536950 ~ 34541410 (+) False LOC110522530
XM_036976147.1 mRNA upstream 75388 34537182 ~ 34541410 (+) False LOC110522530
XM_036976148.1 mRNA upstream 75388 34537207 ~ 34541410 (+) False LOC110522530
XM_021600992.2 mRNA upstream 157591 34455192 ~ 34459207 (+) True LOC110522540
XM_021600986.2 mRNA upstream 219094 34394320 ~ 34397704 (+) True LOC110522537
XM_036976151.1 mRNA downstream 2692 34619900 ~ 34627191 (+) True LOC110522544
XM_021600994.2 mRNA downstream 10157 34627365 ~ 34630001 (+) True rdh14b
XM_021601000.2 mRNA downstream 190399 34807607 ~ 34822986 (+) False LOC110522546
XM_021600998.2 mRNA downstream 190399 34807607 ~ 34831281 (+) False LOC110522546
XM_021600999.2 mRNA downstream 190399 34807607 ~ 34831281 (+) False LOC110522546
TU391481 other upstream 77338 34537001 ~ 34539460 (+) True LOC110522530
TU391145 other upstream 224535 34390973 ~ 34392263 (+) True LOC110522536
TU390035 other upstream 1030487 33584978 ~ 33586311 (+) True LOC110522521
TU390025 other upstream 1062795 33552127 ~ 33554003 (+) False G344647
TU389956 other upstream 1127014 33476693 ~ 33489784 (+) True LOC110521085
TU391730 other downstream 203234 34820442 ~ 34822182 (+) True LOC110522546
TU391880 other downstream 456731 35073939 ~ 35074338 (+) True G346334
TU392774 other downstream 1216161 35833369 ~ 35833844 (+) True G347151
TU392802 other downstream 1291038 35908246 ~ 35908451 (+) True G347178
TU392876 other downstream 1421958 36039166 ~ 36072956 (+) True LOC110522562

Expression Profile