RNA id: TU391727


Basic Information

Item Value
RNA id TU391727
length 1552
lncRNA type read_through
GC content 0.37
exon number 2
gene id G346186
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34761873 ~ 34800749 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATATTCTTAAAAATAGACATTTGAATCATTCCTAAAATATGTGTTAACACACAAAGAAGAAAAAATAGAAATAGTTAATGTTCAACATACAATATAGACTGTccttatacatactgtatattcaacTGTAAACTATATGTAACAAAATACCCGACATGTAACATTTTACTAGTGGAACAGGTATGGTGAACTAGCTTGCTTGAGGTTTTGATATAACATATAGCCTAATTCAGCTTTACTAAGAGCAAGGTGAGGTTTTGATATAACATATAGCCTAATTCAGCTTTACTAAGAGCAAGGTGAGGTTTCTTGCAtctaaaaacaaatatttttaaatggAATAAGAAAATGGAATAGACTAGAACAATGCATGGATAGcaaaaataatataattattgAATATTAAAGTGTTGCTTTTAAAGTTTAGTACATTTCAGACAATAGTTTTTAAAGTCGTGCTCACGAGCCAAAATGGGTCCCCAAAAAATATGCAcaattgtgtactacatcatccattttgtatgatatgtcaTGTcctgcaaaatattttttttaaatgtttgcaattCGAAAATTTGACGAATTTCAATTCGTATAATATGGTACGAGTTTGTAAGTGCTTAAGATCCCGACTGCATCTAAgtgtaaataataaataaataatgtgttAATGTCTGTTTTGTATGGTGTGCAGTGAAACCAAAACGCATATATTTTTTCAGCGCTTCATATCAATAACCATTCTACCTTGTTAGTGCACTAGAGTGCACATATCTAAAGATATAAAATACACTTTTCTAAATATACTTTCATGTGTAAAATTTGAACACactgacatacattttcattaaaaaaactaCATATTTGACCAAATACTATTAAAGACTACAATGTGATGGTGATGAGGATTGTAGGAAAGTGATCCTTTCTCTCCTCATGACAGAGAACATTAGGTGACATTGGTCCCTGATGTGAGTATTACATCTACAGTCCTAAACGATGTGTTTTTTTCTCCTGTTGATACAACATTCTCTGATAAAGATGTTTGTAATAATGTGTAAAAAAGAGAAATAATATAAAATTCTGATAAACAATAAAGGTCCTACAGCTGATGACAGGGTTGTGTGCAACTAAGCATTTGCATAACGTATGATATctccccaccactaggaggctcTTTACTTCTTGTCTTTGACATCTTTGTCAGGCTGCTCAATAAGTTCCCCCTTGTGATACTTCTGTCCGATCCCATAAGGCACGTGTGCAGCGATGGTCCCCAGCTCCTTGGCTCCCTCGATGTGGAACATCTGGTCGTCAAAGAATATGTGGGGCCGGATCTTCTGCAGGAGAGGCCCTTTGGGGGCCCCGGCTAGGAACAGGGCTTCGTCGATCTCCAGGCCCCAGCTCCTGAGGGTCTTGAGGACACGGGCCCCTGAGCTGGCTGCACTGCGGGCTGTTACCAGGTAGGTACGAATGGGGCAGGTCATACGCTCGTTCTTGGCGTAGAACTTTCTCTGGAGCTTCCCCAGCGCCTCCAGGAAACACTTCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391714 lncRNA upstream 33941 34727693 ~ 34727932 (+) True G346175
TU391581 lncRNA upstream 48814 34712618 ~ 34713059 (+) True G346054
TU391567 lncRNA upstream 78734 34682865 ~ 34683139 (+) True G346040
TU391530 lncRNA upstream 144120 34617338 ~ 34617753 (+) True G346003
TU391526 lncRNA upstream 144665 34616798 ~ 34617208 (+) False G346002
TU391764 lncRNA downstream 12667 34813416 ~ 34813658 (+) True G346222
TU391769 lncRNA downstream 31702 34832451 ~ 34837010 (+) True G346227
TU391772 lncRNA downstream 38117 34838866 ~ 34840441 (+) True G346229
TU391808 lncRNA downstream 124974 34925723 ~ 34926041 (+) True G346264
TU391839 lncRNA downstream 186646 34987395 ~ 34988003 (+) True G346294
XM_021600994.2 mRNA upstream 131872 34627365 ~ 34630001 (+) True rdh14b
XM_036976151.1 mRNA upstream 134682 34619900 ~ 34627191 (+) True LOC110522544
XM_036976146.1 mRNA upstream 220463 34536950 ~ 34541410 (+) False LOC110522530
XM_021601000.2 mRNA downstream 6858 34807607 ~ 34822986 (+) False LOC110522546
XM_021600998.2 mRNA downstream 6858 34807607 ~ 34831281 (+) False LOC110522546
XM_021600999.2 mRNA downstream 6858 34807607 ~ 34831281 (+) False LOC110522546
XM_036976153.1 mRNA downstream 6858 34807607 ~ 34831281 (+) False LOC110522546
XM_021601004.2 mRNA downstream 92380 34893129 ~ 34900917 (+) True LOC110522552
TU391481 other upstream 222413 34537001 ~ 34539460 (+) True LOC110522530
TU391145 other upstream 369610 34390973 ~ 34392263 (+) True LOC110522536
TU390035 other upstream 1175562 33584978 ~ 33586311 (+) True LOC110522521
TU390025 other upstream 1207870 33552127 ~ 33554003 (+) False G344647
TU389956 other upstream 1272089 33476693 ~ 33489784 (+) True LOC110521085
TU391730 other downstream 19693 34820442 ~ 34822182 (+) True LOC110522546
TU391880 other downstream 273190 35073939 ~ 35074338 (+) True G346334
TU392774 other downstream 1032620 35833369 ~ 35833844 (+) True G347151
TU392802 other downstream 1107497 35908246 ~ 35908451 (+) True G347178
TU392876 other downstream 1238417 36039166 ~ 36072956 (+) True LOC110522562

Expression Profile