RNA id: TU391764


Basic Information

Item Value
RNA id TU391764
length 243
lncRNA type intronic
GC content 0.40
exon number 1
gene id G346222
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34813416 ~ 34813658 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGAATTAGAATAGTGTGGACAAACCTGGTACATATTTGTCAGAGTAACTCGGCTGTCAACATATATACTTCGTTAGTTGGATGTCAAATGTTCTTTCACTTTTAATGACTGATTTTGTGAACtgctttttaaaatatattgtgGCTGTTACCTGGATACCAGATGCAGCCCTGAGGCTCTGGACTTCagttgacatactgtacatagattGGCCCAAGCAACCCTACACACTTACCTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391727 lncRNA upstream 12667 34761873 ~ 34800749 (+) True G346186
TU391734 lncRNA upstream 45722 34766392 ~ 34767694 (+) True G346192
TU391714 lncRNA upstream 85484 34727693 ~ 34727932 (+) True G346175
TU391581 lncRNA upstream 100357 34712618 ~ 34713059 (+) True G346054
TU391567 lncRNA upstream 130277 34682865 ~ 34683139 (+) True G346040
TU391769 lncRNA downstream 18793 34832451 ~ 34837010 (+) True G346227
TU391772 lncRNA downstream 25208 34838866 ~ 34840441 (+) True G346229
TU391808 lncRNA downstream 112065 34925723 ~ 34926041 (+) True G346264
TU391839 lncRNA downstream 173737 34987395 ~ 34988003 (+) True G346294
TU391841 lncRNA downstream 174484 34988142 ~ 34988828 (+) True G346295
XM_021600994.2 mRNA upstream 183415 34627365 ~ 34630001 (+) True rdh14b
XM_036976151.1 mRNA upstream 186225 34619900 ~ 34627191 (+) True LOC110522544
XM_036976146.1 mRNA upstream 272006 34536950 ~ 34541410 (+) False LOC110522530
XM_021601004.2 mRNA downstream 79471 34893129 ~ 34900917 (+) True LOC110522552
XM_036976157.1 mRNA downstream 89192 34902850 ~ 34916426 (+) False LOC110521087
XM_036976158.1 mRNA downstream 89192 34902850 ~ 34916426 (+) False LOC110521087
XM_036976159.1 mRNA downstream 89192 34902850 ~ 34916426 (+) False LOC110521087
XR_005051525.1 mRNA downstream 89192 34902850 ~ 34916426 (+) False LOC110521087
TU391481 other upstream 273956 34537001 ~ 34539460 (+) True LOC110522530
TU391145 other upstream 421153 34390973 ~ 34392263 (+) True LOC110522536
TU390035 other upstream 1227105 33584978 ~ 33586311 (+) True LOC110522521
TU390025 other upstream 1259413 33552127 ~ 33554003 (+) False G344647
TU389956 other upstream 1323632 33476693 ~ 33489784 (+) True LOC110521085
TU391730 other downstream 6784 34820442 ~ 34822182 (+) True LOC110522546
TU391880 other downstream 260281 35073939 ~ 35074338 (+) True G346334
TU392774 other downstream 1019711 35833369 ~ 35833844 (+) True G347151
TU392802 other downstream 1094588 35908246 ~ 35908451 (+) True G347178
TU392876 other downstream 1225508 36039166 ~ 36072956 (+) True LOC110522562

Expression Profile