RNA id: TU391880


Basic Information

Item Value
RNA id TU391880
length 400
RNA type TUCP
GC content 0.45
exon number 1
gene id G346334
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 35073939 ~ 35074338 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttagagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctcatcaccctgaacacaccatcccgactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391841 lncRNA upstream 85111 34988142 ~ 34988828 (+) True G346295
TU391839 lncRNA upstream 85936 34987395 ~ 34988003 (+) True G346294
TU391808 lncRNA upstream 147898 34925723 ~ 34926041 (+) True G346264
TU391772 lncRNA upstream 233498 34838866 ~ 34840441 (+) True G346229
TU391769 lncRNA upstream 236929 34832451 ~ 34837010 (+) True G346227
TU391894 lncRNA downstream 35616 35109954 ~ 35115330 (+) True G346342
TU391899 lncRNA downstream 66649 35140987 ~ 35141198 (+) True G346346
TU391909 lncRNA downstream 88196 35162534 ~ 35163109 (+) True G346350
TU391910 lncRNA downstream 99442 35173780 ~ 35174189 (+) True G346351
TU391911 lncRNA downstream 104626 35178964 ~ 35179870 (+) True G346352
XM_036976163.1 mRNA upstream 103476 34930250 ~ 34970463 (+) False LOC110522553
XM_036976162.1 mRNA upstream 103476 34930498 ~ 34970463 (+) True LOC110522553
XM_036976157.1 mRNA upstream 157513 34902850 ~ 34916426 (+) False LOC110521087
XM_036976158.1 mRNA upstream 157513 34902850 ~ 34916426 (+) False LOC110521087
XM_036976159.1 mRNA upstream 157513 34902850 ~ 34916426 (+) False LOC110521087
XM_036976164.1 mRNA downstream 175279 35249617 ~ 35418424 (+) True LOC110521089
XM_036976166.1 mRNA downstream 487650 35561988 ~ 35723593 (+) False LOC110521090
XM_036976172.1 mRNA downstream 487650 35561988 ~ 35723593 (+) False LOC110521090
XM_036976173.1 mRNA downstream 487650 35561988 ~ 35723593 (+) False LOC110521090
XM_036976174.1 mRNA downstream 487650 35561988 ~ 35723593 (+) False LOC110521090
TU391730 other upstream 251757 34820442 ~ 34822182 (+) True LOC110522546
TU391481 other upstream 534479 34537001 ~ 34539460 (+) True LOC110522530
TU391145 other upstream 681676 34390973 ~ 34392263 (+) True LOC110522536
TU390035 other upstream 1487628 33584978 ~ 33586311 (+) True LOC110522521
TU390025 other upstream 1519936 33552127 ~ 33554003 (+) False G344647
TU392774 other downstream 759031 35833369 ~ 35833844 (+) True G347151
TU392802 other downstream 833908 35908246 ~ 35908451 (+) True G347178
TU392876 other downstream 964828 36039166 ~ 36072956 (+) True LOC110522562
TU393877 other downstream 2085756 37160094 ~ 37161123 (+) True G348133
TU394044 other downstream 2371129 37445467 ~ 37497006 (+) False LOC110522576

Expression Profile