RNA id: TU392561


Basic Information

Item Value
RNA id TU392561
length 237
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G346960
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 35503970 ~ 35504206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatcagtctgtccctgatgattttcctggagagaagtggcttctttgcttccCTTCtcgacaccaggccatcctccaaaagtcttcgcctcactgtgtatgcagatgcactcacacctgcctgctgccattcctgagcaagctctgtactgatggtgccccGATCCCTCAGCTGAATCAactaggagatggtcctggcgcttgctggattttcttgggcgccctaaagccttcttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392518 lncRNA upstream 26194 35477555 ~ 35477776 (+) True G346919
TU392066 lncRNA upstream 93046 35410490 ~ 35410924 (+) True G346497
TU391940 lncRNA upstream 267260 35236498 ~ 35236710 (+) True G346381
TU391939 lncRNA upstream 269013 35234592 ~ 35234957 (+) True G346380
TU391937 lncRNA upstream 271149 35232555 ~ 35232821 (+) True G346378
TU392579 lncRNA downstream 12794 35517000 ~ 35517266 (+) True G346978
TU392580 lncRNA downstream 13240 35517446 ~ 35517647 (+) True G346979
TU392602 lncRNA downstream 37232 35541438 ~ 35541735 (+) True G346999
TU392669 lncRNA downstream 96799 35601005 ~ 35601879 (+) True G347049
TU392726 lncRNA downstream 210037 35714243 ~ 35714720 (+) True G347103
XM_036976164.1 mRNA upstream 85546 35249617 ~ 35418424 (+) True LOC110521089
XM_036976163.1 mRNA upstream 533507 34930250 ~ 34970463 (+) False LOC110522553
XM_036976162.1 mRNA upstream 533507 34930498 ~ 34970463 (+) True LOC110522553
XM_036976160.1 mRNA upstream 587544 34905099 ~ 34916426 (+) False LOC110521087
XM_036976166.1 mRNA downstream 57782 35561988 ~ 35723593 (+) False LOC110521090
XM_036976172.1 mRNA downstream 57782 35561988 ~ 35723593 (+) False LOC110521090
XM_036976173.1 mRNA downstream 57782 35561988 ~ 35723593 (+) False LOC110521090
XM_036976174.1 mRNA downstream 57782 35561988 ~ 35723593 (+) False LOC110521090
XM_036976167.1 mRNA downstream 57783 35561989 ~ 35723593 (+) False LOC110521090
TU391880 other upstream 429632 35073939 ~ 35074338 (+) True G346334
TU391730 other upstream 681788 34820442 ~ 34822182 (+) True LOC110522546
TU391481 other upstream 964510 34537001 ~ 34539460 (+) True LOC110522530
TU391145 other upstream 1111707 34390973 ~ 34392263 (+) True LOC110522536
TU390035 other upstream 1917659 33584978 ~ 33586311 (+) True LOC110522521
TU392774 other downstream 329163 35833369 ~ 35833844 (+) True G347151
TU392802 other downstream 404040 35908246 ~ 35908451 (+) True G347178
TU392876 other downstream 534960 36039166 ~ 36072956 (+) True LOC110522562
TU393877 other downstream 1655888 37160094 ~ 37161123 (+) True G348133
TU394044 other downstream 1941261 37445467 ~ 37497006 (+) False LOC110522576

Expression Profile