RNA id: TU392774


Basic Information

Item Value
RNA id TU392774
length 476
RNA type TUCP
GC content 0.45
exon number 1
gene id G347151
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 35833369 ~ 35833844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcatatattgcacaaatctggccttcatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtagtttaaagtttgccacaagccatctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaatgtcatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392764 lncRNA upstream 31309 35801817 ~ 35802060 (+) True G347141
TU392765 lncRNA upstream 33125 35797261 ~ 35800244 (+) True G347142
TU392751 lncRNA upstream 52649 35780374 ~ 35780720 (+) True G347128
TU392727 lncRNA upstream 117371 35715107 ~ 35715998 (+) True G347104
TU392726 lncRNA upstream 118649 35714243 ~ 35714720 (+) True G347103
TU392776 lncRNA downstream 5546 35839390 ~ 35839665 (+) True G347153
TU392778 lncRNA downstream 8113 35841957 ~ 35842279 (+) True G347155
TU392759 lncRNA downstream 49350 35883194 ~ 35884241 (+) True LOC118964470
TU392797 lncRNA downstream 67257 35901101 ~ 35901315 (+) True G347173
TU392801 lncRNA downstream 73845 35907689 ~ 35907940 (+) True G347177
XM_036976187.1 mRNA upstream 14061 35803948 ~ 35819308 (+) False LOC110522558
XM_036976188.1 mRNA upstream 14061 35803948 ~ 35819308 (+) False LOC110522558
XM_036976189.1 mRNA upstream 14061 35803950 ~ 35819308 (+) False LOC110522558
XM_036976190.1 mRNA upstream 14061 35803950 ~ 35819308 (+) False LOC110522558
XM_021601014.2 mRNA upstream 14061 35803952 ~ 35819308 (+) False LOC110522558
XR_005051526.1 mRNA downstream 49324 35883168 ~ 35884240 (+) False LOC118964470
XM_021601019.2 mRNA downstream 205252 36039096 ~ 36123362 (+) False LOC110522562
XM_036976203.1 mRNA downstream 305112 36138956 ~ 36154366 (+) False LOC110522563
XM_036976197.1 mRNA downstream 305112 36138956 ~ 36154599 (+) False LOC110522563
XM_036976200.1 mRNA downstream 305112 36138956 ~ 36154599 (+) False LOC110522563
TU391880 other upstream 759031 35073939 ~ 35074338 (+) True G346334
TU391730 other upstream 1011187 34820442 ~ 34822182 (+) True LOC110522546
TU391481 other upstream 1293909 34537001 ~ 34539460 (+) True LOC110522530
TU391145 other upstream 1441106 34390973 ~ 34392263 (+) True LOC110522536
TU390035 other upstream 2247058 33584978 ~ 33586311 (+) True LOC110522521
TU392802 other downstream 74402 35908246 ~ 35908451 (+) True G347178
TU392876 other downstream 205322 36039166 ~ 36072956 (+) True LOC110522562
TU393877 other downstream 1326250 37160094 ~ 37161123 (+) True G348133
TU394044 other downstream 1611623 37445467 ~ 37497006 (+) False LOC110522576
TU395886 other downstream 2570801 38404645 ~ 38405464 (+) True G349855

Expression Profile