RNA id: TU392776


Basic Information

Item Value
RNA id TU392776
length 276
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G347153
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 35839390 ~ 35839665 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCTAACCCTCTAACAACTCTCCATGATCCTAACCCTCTCCCAACTCTCCATGATCCTAACCCTCTCCCAACTCTCCATGATCCTAACCCTCTCCTAACTCTCCATGGTCCTAACACTTTCCATGGTCCTAACATGTTCCTGACTCTCCATGGTCCTAACCCTGTCCTAACCCTGTCCTAACACTTTCCTGACTCTCCATGGTCCTAACCCTGTCCTAACCCTCTCCTGGCCATGCCTTCCTGGTGCTCCAGCAGCACTGAGCTCTGACTCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392764 lncRNA upstream 37330 35801817 ~ 35802060 (+) True G347141
TU392765 lncRNA upstream 39146 35797261 ~ 35800244 (+) True G347142
TU392751 lncRNA upstream 58670 35780374 ~ 35780720 (+) True G347128
TU392727 lncRNA upstream 123392 35715107 ~ 35715998 (+) True G347104
TU392726 lncRNA upstream 124670 35714243 ~ 35714720 (+) True G347103
TU392778 lncRNA downstream 2292 35841957 ~ 35842279 (+) True G347155
TU392759 lncRNA downstream 43529 35883194 ~ 35884241 (+) True LOC118964470
TU392797 lncRNA downstream 61436 35901101 ~ 35901315 (+) True G347173
TU392801 lncRNA downstream 68024 35907689 ~ 35907940 (+) True G347177
TU392838 lncRNA downstream 141483 35981148 ~ 35981926 (+) True G347210
XM_036976187.1 mRNA upstream 20082 35803948 ~ 35819308 (+) False LOC110522558
XM_036976188.1 mRNA upstream 20082 35803948 ~ 35819308 (+) False LOC110522558
XM_036976189.1 mRNA upstream 20082 35803950 ~ 35819308 (+) False LOC110522558
XM_036976190.1 mRNA upstream 20082 35803950 ~ 35819308 (+) False LOC110522558
XM_021601014.2 mRNA upstream 20082 35803952 ~ 35819308 (+) False LOC110522558
XR_005051526.1 mRNA downstream 43503 35883168 ~ 35884240 (+) False LOC118964470
XM_021601019.2 mRNA downstream 199431 36039096 ~ 36123362 (+) False LOC110522562
XM_036976203.1 mRNA downstream 299291 36138956 ~ 36154366 (+) False LOC110522563
XM_036976197.1 mRNA downstream 299291 36138956 ~ 36154599 (+) False LOC110522563
XM_036976200.1 mRNA downstream 299291 36138956 ~ 36154599 (+) False LOC110522563
TU392774 other upstream 5546 35833369 ~ 35833844 (+) True G347151
TU391880 other upstream 765052 35073939 ~ 35074338 (+) True G346334
TU391730 other upstream 1017208 34820442 ~ 34822182 (+) True LOC110522546
TU391481 other upstream 1299930 34537001 ~ 34539460 (+) True LOC110522530
TU391145 other upstream 1447127 34390973 ~ 34392263 (+) True LOC110522536
TU392802 other downstream 68581 35908246 ~ 35908451 (+) True G347178
TU392876 other downstream 199501 36039166 ~ 36072956 (+) True LOC110522562
TU393877 other downstream 1320429 37160094 ~ 37161123 (+) True G348133
TU394044 other downstream 1605802 37445467 ~ 37497006 (+) False LOC110522576
TU395886 other downstream 2564980 38404645 ~ 38405464 (+) True G349855

Expression Profile