RNA id: TU393899


Basic Information

Item Value
RNA id TU393899
length 419
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G348154
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37229588 ~ 37230006 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAAAACATTACATTTGGTAATGATGCTACTCTGAGTAAAAACACAGGCCTGTCAAAGTTCGCTAatgtgtttcctgttgtgtttTTGTAATGTAGTGGATGAGTAGAGGCTTAGTGGGAGTTGAGGTGAAGTCAGccacacagagaaacagaacaTTGTACATTAATCGTTTTGCTACTTTACATTTTGTTCTGAACTGCATTTTGTTCATGTGACAAACACACTTTGATTTGACATCAATGTGTGTAAACTGGACTGAATAAGTGTAACttcagaccgtcccctcgcccatacctgggcgcaaaccagagaccctctgcacacatcaacaacagtcacccacgaagcatcgttacccatcgctccacaacaaccgcggcccttgcagagcaaggggaaccactacttcaaggtctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393898 lncRNA upstream 525 37228793 ~ 37229063 (+) True G348153
TU393892 lncRNA upstream 46524 37182834 ~ 37183064 (+) True G348147
TU393890 lncRNA upstream 48196 37181189 ~ 37181392 (+) True G348145
TU393888 lncRNA upstream 49427 37179960 ~ 37180161 (+) True G348143
TU393886 lncRNA upstream 53028 37176357 ~ 37176560 (+) True G348141
TU393900 lncRNA downstream 90 37230096 ~ 37231456 (+) True G348155
TU393901 lncRNA downstream 1710 37231716 ~ 37231978 (+) True G348156
TU393902 lncRNA downstream 2006 37232012 ~ 37232383 (+) True G348157
TU393903 lncRNA downstream 3138 37233144 ~ 37233554 (+) True G348158
TU393904 lncRNA downstream 3838 37233844 ~ 37234431 (+) True G348159
XM_036976211.1 mRNA upstream 3315 37188010 ~ 37226273 (+) True LOC110517371
XM_036976210.1 mRNA upstream 62546 37153024 ~ 37167042 (+) True snw1
XR_002473342.2 mRNA upstream 189536 37038555 ~ 37040052 (+) True LOC110522575
XM_036976196.1 mRNA upstream 1071263 36138957 ~ 36158325 (+) True LOC110522563
XM_036976204.1 mRNA upstream 1074989 36138957 ~ 36154599 (+) False LOC110522563
XM_021601024.2 mRNA downstream 41167 37271173 ~ 37283482 (+) True LOC110522567
XM_021601026.2 mRNA downstream 54255 37284261 ~ 37402023 (+) False LOC110522568
XM_021601025.2 mRNA downstream 54256 37284262 ~ 37402023 (+) True LOC110522568
XM_036976216.1 mRNA downstream 215362 37445368 ~ 37501952 (+) False LOC110522576
XM_036976217.1 mRNA downstream 230002 37460008 ~ 37501952 (+) False LOC110522576
TU393877 other upstream 68465 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1156632 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 1321137 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 1395744 35833369 ~ 35833844 (+) True G347151
TU391880 other upstream 2155250 35073939 ~ 35074338 (+) True G346334
TU394044 other downstream 215461 37445467 ~ 37497006 (+) False LOC110522576
TU395886 other downstream 1174639 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 1202173 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 1660377 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 1660377 38890383 ~ 38896021 (+) False LOC110522591

Expression Profile