RNA id: TU393904


Basic Information

Item Value
RNA id TU393904
length 588
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G348159
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37233844 ~ 37234431 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacattctagacgattctgtctAAGGCCCAATtctggggaaggccctttcctgtttcaacatgacaatgcccccatgcacaaaacgaggttcatacagaaatggtttgttgagataggtatggaagaacttgactggcctgcacagagccctgacgtcaaccccattgaacacctgtgggatgaattggaacgccaactgtgagccaggcctaatcgcccaacatcagcttccgacctcactaatgctcttgtggctgaatggaagcaatgttacaacatctagtggaaagccttcccagaagagtagaggctgttatagcagcaaagggggggaccaagtccatattaatgccaatgattttggagtgagatgttcgatgagcaggtgtccacatacttttggtaatgtcaTGTATTACCCAATTTGAAAAAGTACCGCGTTACTTTACTCCATTACTCATAAAAGTAATCTGATTATATAACATGTTACTTTTGTAACGCGTTACCCCCAACACTGATGgtcagtcacacagacagagctCCTACAACACCAACAGGCTAGATGACAACGTCATGCTTACATGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393903 lncRNA upstream 290 37233144 ~ 37233554 (+) True G348158
TU393902 lncRNA upstream 1461 37232012 ~ 37232383 (+) True G348157
TU393901 lncRNA upstream 1866 37231716 ~ 37231978 (+) True G348156
TU393900 lncRNA upstream 2388 37230096 ~ 37231456 (+) True G348155
TU393899 lncRNA upstream 3838 37229588 ~ 37230006 (+) True G348154
TU393906 lncRNA downstream 2456 37236887 ~ 37237277 (+) True G348161
TU393908 lncRNA downstream 10834 37245265 ~ 37245515 (+) True G348163
TU393910 lncRNA downstream 11857 37246288 ~ 37246489 (+) True G348165
TU393911 lncRNA downstream 12613 37247044 ~ 37247380 (+) True G348166
TU393913 lncRNA downstream 14149 37248580 ~ 37248787 (+) True G348168
XM_036976211.1 mRNA upstream 7571 37188010 ~ 37226273 (+) True LOC110517371
XM_036976210.1 mRNA upstream 66802 37153024 ~ 37167042 (+) True snw1
XR_002473342.2 mRNA upstream 193792 37038555 ~ 37040052 (+) True LOC110522575
XM_036976196.1 mRNA upstream 1075519 36138957 ~ 36158325 (+) True LOC110522563
XM_036976204.1 mRNA upstream 1079245 36138957 ~ 36154599 (+) False LOC110522563
XM_021601024.2 mRNA downstream 36742 37271173 ~ 37283482 (+) True LOC110522567
XM_021601026.2 mRNA downstream 49830 37284261 ~ 37402023 (+) False LOC110522568
XM_021601025.2 mRNA downstream 49831 37284262 ~ 37402023 (+) True LOC110522568
XM_036976216.1 mRNA downstream 210937 37445368 ~ 37501952 (+) False LOC110522576
XM_036976217.1 mRNA downstream 225577 37460008 ~ 37501952 (+) False LOC110522576
TU393877 other upstream 72721 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1160888 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 1325393 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 1400000 35833369 ~ 35833844 (+) True G347151
TU391880 other upstream 2159506 35073939 ~ 35074338 (+) True G346334
TU394044 other downstream 211036 37445467 ~ 37497006 (+) False LOC110522576
TU395886 other downstream 1170214 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 1197748 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 1655952 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 1655952 38890383 ~ 38896021 (+) False LOC110522591

Expression Profile