RNA id: TU393911


Basic Information

Item Value
RNA id TU393911
length 337
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G348166
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37247044 ~ 37247380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393910 lncRNA upstream 555 37246288 ~ 37246489 (+) True G348165
TU393908 lncRNA upstream 1529 37245265 ~ 37245515 (+) True G348163
TU393906 lncRNA upstream 9767 37236887 ~ 37237277 (+) True G348161
TU393904 lncRNA upstream 12613 37233844 ~ 37234431 (+) True G348159
TU393903 lncRNA upstream 13490 37233144 ~ 37233554 (+) True G348158
TU393913 lncRNA downstream 1200 37248580 ~ 37248787 (+) True G348168
TU393918 lncRNA downstream 7316 37254696 ~ 37254902 (+) True G348173
TU393921 lncRNA downstream 49434 37296814 ~ 37302113 (+) True G348176
TU393920 lncRNA downstream 51103 37298483 ~ 37299323 (+) True G348175
TU393968 lncRNA downstream 64930 37312310 ~ 37364526 (+) True G348206
XM_036976211.1 mRNA upstream 20771 37188010 ~ 37226273 (+) True LOC110517371
XM_036976210.1 mRNA upstream 80002 37153024 ~ 37167042 (+) True snw1
XR_002473342.2 mRNA upstream 206992 37038555 ~ 37040052 (+) True LOC110522575
XM_036976196.1 mRNA upstream 1088719 36138957 ~ 36158325 (+) True LOC110522563
XM_036976204.1 mRNA upstream 1092445 36138957 ~ 36154599 (+) False LOC110522563
XM_021601024.2 mRNA downstream 23793 37271173 ~ 37283482 (+) True LOC110522567
XM_021601026.2 mRNA downstream 36881 37284261 ~ 37402023 (+) False LOC110522568
XM_021601025.2 mRNA downstream 36882 37284262 ~ 37402023 (+) True LOC110522568
XM_036976216.1 mRNA downstream 197988 37445368 ~ 37501952 (+) False LOC110522576
XM_036976217.1 mRNA downstream 212628 37460008 ~ 37501952 (+) False LOC110522576
TU393877 other upstream 85921 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1174088 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 1338593 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 1413200 35833369 ~ 35833844 (+) True G347151
TU391880 other upstream 2172706 35073939 ~ 35074338 (+) True G346334
TU394044 other downstream 198087 37445467 ~ 37497006 (+) False LOC110522576
TU395886 other downstream 1157265 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 1184799 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 1643003 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 1643003 38890383 ~ 38896021 (+) False LOC110522591

Expression Profile