RNA id: TU393913


Basic Information

Item Value
RNA id TU393913
length 208
lncRNA type antisense_over
GC content 0.60
exon number 1
gene id G348168
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37248580 ~ 37248787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CtcaggctctggctggggcaGAACCCCTACGGAGCGGTGCTGGGAGTGGAACCACCTCCTCTTGTGGCGGTGCTCAGTGACAGGGGGGAGGAGGTTCTGGACCTGGTTCTGCTGCTCCAGGGCCTCCGGTCCATGATGGACCCCACTGATGGGCGGCTGATCACGAGCCTGAGGAAAAAGATAGGACACCTCAATTAATCATCATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393911 lncRNA upstream 1200 37247044 ~ 37247380 (+) True G348166
TU393910 lncRNA upstream 2091 37246288 ~ 37246489 (+) True G348165
TU393908 lncRNA upstream 3065 37245265 ~ 37245515 (+) True G348163
TU393906 lncRNA upstream 11303 37236887 ~ 37237277 (+) True G348161
TU393904 lncRNA upstream 14149 37233844 ~ 37234431 (+) True G348159
TU393918 lncRNA downstream 5909 37254696 ~ 37254902 (+) True G348173
TU393921 lncRNA downstream 48027 37296814 ~ 37302113 (+) True G348176
TU393920 lncRNA downstream 49696 37298483 ~ 37299323 (+) True G348175
TU393968 lncRNA downstream 63523 37312310 ~ 37364526 (+) True G348206
TU393986 lncRNA downstream 86008 37334795 ~ 37336753 (+) True G348220
XM_036976211.1 mRNA upstream 22307 37188010 ~ 37226273 (+) True LOC110517371
XM_036976210.1 mRNA upstream 81538 37153024 ~ 37167042 (+) True snw1
XR_002473342.2 mRNA upstream 208528 37038555 ~ 37040052 (+) True LOC110522575
XM_036976196.1 mRNA upstream 1090255 36138957 ~ 36158325 (+) True LOC110522563
XM_036976204.1 mRNA upstream 1093981 36138957 ~ 36154599 (+) False LOC110522563
XM_021601024.2 mRNA downstream 22386 37271173 ~ 37283482 (+) True LOC110522567
XM_021601026.2 mRNA downstream 35474 37284261 ~ 37402023 (+) False LOC110522568
XM_021601025.2 mRNA downstream 35475 37284262 ~ 37402023 (+) True LOC110522568
XM_036976216.1 mRNA downstream 196581 37445368 ~ 37501952 (+) False LOC110522576
XM_036976217.1 mRNA downstream 211221 37460008 ~ 37501952 (+) False LOC110522576
TU393877 other upstream 87457 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1175624 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 1340129 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 1414736 35833369 ~ 35833844 (+) True G347151
TU391880 other upstream 2174242 35073939 ~ 35074338 (+) True G346334
TU394044 other downstream 196680 37445467 ~ 37497006 (+) False LOC110522576
TU395886 other downstream 1155858 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 1183392 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 1641596 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 1641596 38890383 ~ 38896021 (+) False LOC110522591

Expression Profile