RNA id: TU393968


Basic Information

Item Value
RNA id TU393968
length 626
lncRNA type intronic
GC content 0.39
exon number 2
gene id G348206
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37312310 ~ 37364526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaacatatgttaacattgccaaagcaagtgaagtagataataaacaaaagtgaaataaacaataaaaatgaacagtaaacattacactcacagaagttccaaaagaataaagacatttcaaatgtcattatgtgacctgtgttgtaacaatgtgcaaatagtacaaaaagggaaaataaataagcataaatatgggttgtatttacaatggtgtttgttcttcactggttgaccttttcttgtggcaacaggtcacaaatcttgctgctgtgatggcacactgtggaatttcacccagtagatatgggagtttatcaaaattgggtttgttttctaattctttgtgggtctgtgtaatctgagggaaatatgtgtctctaatatggtcatacatttggcaggaggttaggaagtgcagctcagtttccacctaattttgtgggcagtgtgcacatagcctgtcttctctcgagagccaggtctgcctacggcggcctttctcaatagcaaggctatgctcactgagtctgtacatagtcaaagctttccttaattttgggtcagtcacagtggtcaggtattccgtcgctgtgtactctctgtttagggccaaatagcattctag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393921 lncRNA upstream 10197 37296814 ~ 37302113 (+) True G348176
TU393920 lncRNA upstream 12987 37298483 ~ 37299323 (+) True G348175
TU393918 lncRNA upstream 57408 37254696 ~ 37254902 (+) True G348173
TU393913 lncRNA upstream 63523 37248580 ~ 37248787 (+) True G348168
TU393911 lncRNA upstream 64930 37247044 ~ 37247380 (+) True G348166
TU394041 lncRNA downstream 75839 37440365 ~ 37441506 (+) True G348267
TU394039 lncRNA downstream 76532 37441058 ~ 37509205 (+) True G348266
TU394064 lncRNA downstream 124873 37489399 ~ 37489902 (+) True G348287
TU394045 lncRNA downstream 132815 37497341 ~ 37497818 (+) False LOC110522576
TU394043 lncRNA downstream 135623 37500149 ~ 37501852 (+) True LOC110522576
XM_021601024.2 mRNA upstream 28828 37271173 ~ 37283482 (+) True LOC110522567
XM_036976211.1 mRNA upstream 86037 37188010 ~ 37226273 (+) True LOC110517371
XM_036976210.1 mRNA upstream 145268 37153024 ~ 37167042 (+) True snw1
XR_002473342.2 mRNA upstream 272258 37038555 ~ 37040052 (+) True LOC110522575
XM_036976196.1 mRNA upstream 1153985 36138957 ~ 36158325 (+) True LOC110522563
XM_036976216.1 mRNA downstream 80842 37445368 ~ 37501952 (+) False LOC110522576
XM_036976217.1 mRNA downstream 95482 37460008 ~ 37501952 (+) False LOC110522576
XR_002473341.2 mRNA downstream 158283 37522809 ~ 37524068 (+) True LOC110522574
XR_005051527.1 mRNA downstream 483453 37847979 ~ 37855029 (+) True LOC118964471
XM_036976220.1 mRNA downstream 506226 37870752 ~ 37878518 (+) False actc1a
TU393877 other upstream 151187 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1239354 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 1403859 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 1478466 35833369 ~ 35833844 (+) True G347151
TU391880 other upstream 2237972 35073939 ~ 35074338 (+) True G346334
TU394044 other downstream 80941 37445467 ~ 37497006 (+) False LOC110522576
TU395886 other downstream 1040119 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 1067653 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 1525857 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 1525857 38890383 ~ 38896021 (+) False LOC110522591

Expression Profile