RNA id: TU393986


Basic Information

Item Value
RNA id TU393986
length 375
lncRNA type intronic
GC content 0.42
exon number 2
gene id G348220
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37334795 ~ 37336753 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggatatataaggagaggcagagggagagagatgtataataagagggagagagatatataaggttagggagagagagatataaggagagggagagagatatataaggagagggagagggagagagatgtataatgagagggagagagatatataaggttagggagagagagatataatgagagggagagagatatataaggttagggagagagatataaggagagggagagagatatataaggttagggagagagatataaggagagggagagagatatataaggttagggagagagatataaggagagggagagagatatataaggagagggagagagatttataaggagagggagagggagagagatggagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393921 lncRNA upstream 32682 37296814 ~ 37302113 (+) True G348176
TU393920 lncRNA upstream 35472 37298483 ~ 37299323 (+) True G348175
TU393918 lncRNA upstream 79893 37254696 ~ 37254902 (+) True G348173
TU393913 lncRNA upstream 86008 37248580 ~ 37248787 (+) True G348168
TU393911 lncRNA upstream 87415 37247044 ~ 37247380 (+) True G348166
TU393952 lncRNA downstream 19411 37356164 ~ 37428991 (+) True G348193
TU393999 lncRNA downstream 22678 37359431 ~ 37359778 (+) True G348232
TU394001 lncRNA downstream 24828 37361581 ~ 37362524 (+) True G348234
TU394041 lncRNA downstream 103612 37440365 ~ 37441506 (+) True G348267
TU394039 lncRNA downstream 104305 37441058 ~ 37509205 (+) True G348266
XM_021601024.2 mRNA upstream 51313 37271173 ~ 37283482 (+) True LOC110522567
XM_036976211.1 mRNA upstream 108522 37188010 ~ 37226273 (+) True LOC110517371
XM_036976210.1 mRNA upstream 167753 37153024 ~ 37167042 (+) True snw1
XR_002473342.2 mRNA upstream 294743 37038555 ~ 37040052 (+) True LOC110522575
XM_036976196.1 mRNA upstream 1176470 36138957 ~ 36158325 (+) True LOC110522563
XM_036976216.1 mRNA downstream 108615 37445368 ~ 37501952 (+) False LOC110522576
XM_036976217.1 mRNA downstream 123255 37460008 ~ 37501952 (+) False LOC110522576
XR_002473341.2 mRNA downstream 186056 37522809 ~ 37524068 (+) True LOC110522574
XR_005051527.1 mRNA downstream 511226 37847979 ~ 37855029 (+) True LOC118964471
XM_036976220.1 mRNA downstream 533999 37870752 ~ 37878518 (+) False actc1a
TU393877 other upstream 173672 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1261839 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 1426344 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 1500951 35833369 ~ 35833844 (+) True G347151
TU391880 other upstream 2260457 35073939 ~ 35074338 (+) True G346334
TU394044 other downstream 108714 37445467 ~ 37497006 (+) False LOC110522576
TU395886 other downstream 1067892 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 1095426 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 1553630 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 1553630 38890383 ~ 38896021 (+) False LOC110522591

Expression Profile