RNA id: TU393999


Basic Information

Item Value
RNA id TU393999
length 258
lncRNA type intronic
GC content 0.44
exon number 2
gene id G348232
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37359431 ~ 37359778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATAacagactgttactgtgtttgCTTGAGGTTGTCCTTGACATCCATAACAGACTGTTCCCGTGTTTGCTTGAGGTTGTCCTTGACATCCATGacagactgttactgtgtttaCTTGAGGTTGTCCTTGACATCCATAacagactgttactgtgtttgCTTGAGGTTGTCCTTGACATCCATAACAGACTGTTCCCGTGTTTGCTTGAGGTTGTCCTTGACATCCATGacagactgttactgtgtttgCTTGAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393986 lncRNA upstream 22678 37334795 ~ 37336753 (+) True G348220
TU393921 lncRNA upstream 57318 37296814 ~ 37302113 (+) True G348176
TU393920 lncRNA upstream 60108 37298483 ~ 37299323 (+) True G348175
TU393918 lncRNA upstream 104529 37254696 ~ 37254902 (+) True G348173
TU393913 lncRNA upstream 110644 37248580 ~ 37248787 (+) True G348168
TU394001 lncRNA downstream 1803 37361581 ~ 37362524 (+) True G348234
TU394041 lncRNA downstream 80587 37440365 ~ 37441506 (+) True G348267
TU394039 lncRNA downstream 81280 37441058 ~ 37509205 (+) True G348266
TU394064 lncRNA downstream 129621 37489399 ~ 37489902 (+) True G348287
TU394045 lncRNA downstream 137563 37497341 ~ 37497818 (+) False LOC110522576
XM_021601024.2 mRNA upstream 75949 37271173 ~ 37283482 (+) True LOC110522567
XM_036976211.1 mRNA upstream 133158 37188010 ~ 37226273 (+) True LOC110517371
XM_036976210.1 mRNA upstream 192389 37153024 ~ 37167042 (+) True snw1
XR_002473342.2 mRNA upstream 319379 37038555 ~ 37040052 (+) True LOC110522575
XM_036976196.1 mRNA upstream 1201106 36138957 ~ 36158325 (+) True LOC110522563
XM_036976216.1 mRNA downstream 85590 37445368 ~ 37501952 (+) False LOC110522576
XM_036976217.1 mRNA downstream 100230 37460008 ~ 37501952 (+) False LOC110522576
XR_002473341.2 mRNA downstream 163031 37522809 ~ 37524068 (+) True LOC110522574
XR_005051527.1 mRNA downstream 488201 37847979 ~ 37855029 (+) True LOC118964471
XM_036976220.1 mRNA downstream 510974 37870752 ~ 37878518 (+) False actc1a
TU393877 other upstream 198308 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1286475 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 1450980 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 1525587 35833369 ~ 35833844 (+) True G347151
TU391880 other upstream 2285093 35073939 ~ 35074338 (+) True G346334
TU394044 other downstream 85689 37445467 ~ 37497006 (+) False LOC110522576
TU395886 other downstream 1044867 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 1072401 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 1530605 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 1530605 38890383 ~ 38896021 (+) False LOC110522591

Expression Profile