RNA id: TU394041


Basic Information

Item Value
RNA id TU394041
length 627
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G348267
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37440365 ~ 37441506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccctgggtcgctcctcttttcagttcgctgcagctagcgactggaacgagctgcagcAAACACTCAaattggacagttttatctcaatctcttcataaaaagactcaatcatggacactcttattgCCAGTTGTGGCtactttgtgtgatgtattgttgtctctaccctcttgccctttgtgctgttgtctgtaatgtttgtaccatgatttgtgctgctaccatgttgtgttgctaccatgttgttgtcatgttcagttgctaccatgctgttgtgtagtctctctttatgtagtgttgtatagtctctctttatgtagtgttgtatagtctctctttatgtagtgttgtgtagtctctctttatgtagtgttgtcttaggtctctctttatgtagtgttgtgtagtctctctttatgtagtgttgtcttaggtctctctttatgtagtgttgtatagtctctctttatgtagtgttgtgtagtctctctttatgtagtgttgtcttaggtctctctttatgtagtgttgtgtagtctctctttatgtagtgttgtctcaggtctctctttatgtagtgttgtgtagtctctctttatgtagtgttgtatagtctctctttatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393952 lncRNA upstream 11374 37356164 ~ 37428991 (+) True G348193
TU393968 lncRNA upstream 75839 37312310 ~ 37364526 (+) True G348206
TU394001 lncRNA upstream 77841 37361581 ~ 37362524 (+) True G348234
TU393999 lncRNA upstream 80587 37359431 ~ 37359778 (+) True G348232
TU393986 lncRNA upstream 103612 37334795 ~ 37336753 (+) True G348220
TU394064 lncRNA downstream 47893 37489399 ~ 37489902 (+) True G348287
TU394045 lncRNA downstream 55835 37497341 ~ 37497818 (+) False LOC110522576
TU394043 lncRNA downstream 58643 37500149 ~ 37501852 (+) True LOC110522576
TU394070 lncRNA downstream 74325 37515831 ~ 37516214 (+) True G348293
TU394072 lncRNA downstream 76372 37517878 ~ 37518424 (+) True G348295
XM_021601026.2 mRNA upstream 38342 37284261 ~ 37402023 (+) False LOC110522568
XM_021601025.2 mRNA upstream 38342 37284262 ~ 37402023 (+) True LOC110522568
XM_021601024.2 mRNA upstream 156883 37271173 ~ 37283482 (+) True LOC110522567
XM_036976211.1 mRNA upstream 214092 37188010 ~ 37226273 (+) True LOC110517371
XM_036976210.1 mRNA upstream 273323 37153024 ~ 37167042 (+) True snw1
XM_036976216.1 mRNA downstream 3862 37445368 ~ 37501952 (+) False LOC110522576
XM_036976217.1 mRNA downstream 18502 37460008 ~ 37501952 (+) False LOC110522576
XR_002473341.2 mRNA downstream 81303 37522809 ~ 37524068 (+) True LOC110522574
XR_005051527.1 mRNA downstream 406473 37847979 ~ 37855029 (+) True LOC118964471
XM_036976220.1 mRNA downstream 429246 37870752 ~ 37878518 (+) False actc1a
TU393877 other upstream 279242 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1367409 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 1531914 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 1606521 35833369 ~ 35833844 (+) True G347151
TU391880 other upstream 2366027 35073939 ~ 35074338 (+) True G346334
TU394044 other downstream 3961 37445467 ~ 37497006 (+) False LOC110522576
TU395886 other downstream 963139 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 990673 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 1448877 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 1448877 38890383 ~ 38896021 (+) False LOC110522591

Expression Profile