RNA id: TU394064


Basic Information

Item Value
RNA id TU394064
length 358
lncRNA type intronic
GC content 0.41
exon number 2
gene id G348287
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37489399 ~ 37489902 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATAGCACAGTCTTTATTGGCTGGAGTGATAGATAAATAGACAtacatcccctctctccctggcgtGGTGTATTCGTGGGTGTGTATTCGTGTATTCGTGGGTGTGTATTTGTGGATTCGTGGGTGTGTATTTCTGTATTCGTGGGTGTGTATTTCTGTATTCGTGGGTATGTATTTGTGTATTCGTGGGTATGTATTTGTGTATTTGTGGGTATGTATTTGTGTATTCgtgggtgtgtatttgtgtatttgtgggtgtgtatttgtgtatttgtgggtgtgtatttgtgtattcgTGGGTATGTATTTGTGTATTCgtgggtgtgtatttgtgtatttgtgggtgtgtgcttgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394041 lncRNA upstream 47893 37440365 ~ 37441506 (+) True G348267
TU393952 lncRNA upstream 60408 37356164 ~ 37428991 (+) True G348193
TU393968 lncRNA upstream 124873 37312310 ~ 37364526 (+) True G348206
TU394001 lncRNA upstream 126875 37361581 ~ 37362524 (+) True G348234
TU393999 lncRNA upstream 129621 37359431 ~ 37359778 (+) True G348232
TU394045 lncRNA downstream 7439 37497341 ~ 37497818 (+) False LOC110522576
TU394043 lncRNA downstream 10247 37500149 ~ 37501852 (+) True LOC110522576
TU394070 lncRNA downstream 25929 37515831 ~ 37516214 (+) True G348293
TU394072 lncRNA downstream 27976 37517878 ~ 37518424 (+) True G348295
TU394079 lncRNA downstream 41260 37531162 ~ 37531455 (+) True G348302
XM_021601026.2 mRNA upstream 87376 37284261 ~ 37402023 (+) False LOC110522568
XM_021601025.2 mRNA upstream 87376 37284262 ~ 37402023 (+) True LOC110522568
XM_021601024.2 mRNA upstream 205917 37271173 ~ 37283482 (+) True LOC110522567
XM_036976211.1 mRNA upstream 263126 37188010 ~ 37226273 (+) True LOC110517371
XM_036976210.1 mRNA upstream 322357 37153024 ~ 37167042 (+) True snw1
XR_002473341.2 mRNA downstream 32907 37522809 ~ 37524068 (+) True LOC110522574
XR_005051527.1 mRNA downstream 358077 37847979 ~ 37855029 (+) True LOC118964471
XM_036976220.1 mRNA downstream 380850 37870752 ~ 37878518 (+) False actc1a
XM_036976221.1 mRNA downstream 382362 37872264 ~ 37878518 (+) True actc1a
XM_036976480.1 mRNA downstream 389500 37879402 ~ 37897524 (+) True LOC110521098
TU393877 other upstream 328276 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1416443 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 1580948 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 1655555 35833369 ~ 35833844 (+) True G347151
TU391880 other upstream 2415061 35073939 ~ 35074338 (+) True G346334
TU395886 other downstream 914743 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 942277 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 1400481 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 1400481 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 1404241 38894143 ~ 38896521 (+) False LOC110522591

Expression Profile