RNA id: TU394070


Basic Information

Item Value
RNA id TU394070
length 384
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G348293
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37515831 ~ 37516214 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaggctacctgaaacgtttgacccaagttaaacaatttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctaacccactgggaatgtgatgaaagaaatgaaagctgaaggaaatcattctctctactattattctgacatttcatattcttaaaataaagtggtgatcctaactgacctaaaacagggaattttaccaggattaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgtagacttccgacttcaactgtatgtgcatataaatatatggatgagcgatggacaagcggcataggcaaggtacaattgatgataaaaaatacagtatctacatatcATATGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394039 lncRNA upstream 6626 37441058 ~ 37509205 (+) True G348266
TU394043 lncRNA upstream 13979 37500149 ~ 37501852 (+) True LOC110522576
TU394045 lncRNA upstream 18013 37497341 ~ 37497818 (+) False LOC110522576
TU394064 lncRNA upstream 25929 37489399 ~ 37489902 (+) True G348287
TU394041 lncRNA upstream 74325 37440365 ~ 37441506 (+) True G348267
TU394072 lncRNA downstream 1664 37517878 ~ 37518424 (+) True G348295
TU394079 lncRNA downstream 14948 37531162 ~ 37531455 (+) True G348302
TU394085 lncRNA downstream 29932 37546146 ~ 37546352 (+) True G348308
TU394100 lncRNA downstream 54627 37570841 ~ 37571226 (+) True G348320
TU394103 lncRNA downstream 69215 37585429 ~ 37593367 (+) True G348323
XM_036976216.1 mRNA upstream 13879 37445368 ~ 37501952 (+) False LOC110522576
XM_036976217.1 mRNA upstream 13879 37460008 ~ 37501952 (+) False LOC110522576
XM_021601026.2 mRNA upstream 113808 37284261 ~ 37402023 (+) False LOC110522568
XM_021601025.2 mRNA upstream 113808 37284262 ~ 37402023 (+) True LOC110522568
XM_021601024.2 mRNA upstream 232349 37271173 ~ 37283482 (+) True LOC110522567
XR_002473341.2 mRNA downstream 6595 37522809 ~ 37524068 (+) True LOC110522574
XR_005051527.1 mRNA downstream 331765 37847979 ~ 37855029 (+) True LOC118964471
XM_036976220.1 mRNA downstream 354538 37870752 ~ 37878518 (+) False actc1a
XM_036976221.1 mRNA downstream 356050 37872264 ~ 37878518 (+) True actc1a
XM_036976480.1 mRNA downstream 363188 37879402 ~ 37897524 (+) True LOC110521098
TU394044 other upstream 18825 37445467 ~ 37497006 (+) False LOC110522576
TU393877 other upstream 354708 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1442875 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 1607380 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 1681987 35833369 ~ 35833844 (+) True G347151
TU395886 other downstream 888431 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 915965 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 1374169 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 1374169 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 1377929 38894143 ~ 38896521 (+) False LOC110522591

Expression Profile