RNA id: TU394072


Basic Information

Item Value
RNA id TU394072
length 547
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G348295
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37517878 ~ 37518424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaccactgtgacctgtatgctctagtcgactggccctcgctacatattcgtcgtcaGACCAACTGGCACCAAGGCAtttataagtctatgctaggtaaagctccgccttatctcagttcactggtcacgataacaacacccacccgtagcacacgttccagcaggtatatctcacggatcatccccaaagccaacacctcatttggtctcctttccttccagttctctgctgccagtgactggaacgaattgcaaaaatcgctgaagttggagacttttatttccctcaccaactttaaacatcagctatctgagcagctaaccgatcgctgcagctgtacatagtccatctgtaaataacccacccaatctacctacctcatccccatactgtttttattttatttacttttctgctcttttgcacaccagtatctctacttgcacatcatcatctgctcatctatcactccagtgttaatctgataaattgtaattattcgctccaatggcctatttattgctgacctcctcatgccttttgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394070 lncRNA upstream 1664 37515831 ~ 37516214 (+) True G348293
TU394039 lncRNA upstream 8673 37441058 ~ 37509205 (+) True G348266
TU394043 lncRNA upstream 16026 37500149 ~ 37501852 (+) True LOC110522576
TU394045 lncRNA upstream 20060 37497341 ~ 37497818 (+) False LOC110522576
TU394064 lncRNA upstream 27976 37489399 ~ 37489902 (+) True G348287
TU394079 lncRNA downstream 12738 37531162 ~ 37531455 (+) True G348302
TU394085 lncRNA downstream 27722 37546146 ~ 37546352 (+) True G348308
TU394100 lncRNA downstream 52417 37570841 ~ 37571226 (+) True G348320
TU394103 lncRNA downstream 67005 37585429 ~ 37593367 (+) True G348323
TU394115 lncRNA downstream 87509 37605933 ~ 37651426 (+) True G348335
XM_036976216.1 mRNA upstream 15926 37445368 ~ 37501952 (+) False LOC110522576
XM_036976217.1 mRNA upstream 15926 37460008 ~ 37501952 (+) False LOC110522576
XM_021601026.2 mRNA upstream 115855 37284261 ~ 37402023 (+) False LOC110522568
XM_021601025.2 mRNA upstream 115855 37284262 ~ 37402023 (+) True LOC110522568
XM_021601024.2 mRNA upstream 234396 37271173 ~ 37283482 (+) True LOC110522567
XR_002473341.2 mRNA downstream 4385 37522809 ~ 37524068 (+) True LOC110522574
XR_005051527.1 mRNA downstream 329555 37847979 ~ 37855029 (+) True LOC118964471
XM_036976220.1 mRNA downstream 352328 37870752 ~ 37878518 (+) False actc1a
XM_036976221.1 mRNA downstream 353840 37872264 ~ 37878518 (+) True actc1a
XM_036976480.1 mRNA downstream 360978 37879402 ~ 37897524 (+) True LOC110521098
TU394044 other upstream 20872 37445467 ~ 37497006 (+) False LOC110522576
TU393877 other upstream 356755 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1444922 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 1609427 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 1684034 35833369 ~ 35833844 (+) True G347151
TU395886 other downstream 886221 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 913755 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 1371959 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 1371959 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 1375719 38894143 ~ 38896521 (+) False LOC110522591

Expression Profile