RNA id: TU394079


Basic Information

Item Value
RNA id TU394079
length 294
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G348302
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37531162 ~ 37531455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggccgttcaggttatgtcaatatagtaAACTcattgttattgaccaaatacgtattttccaccataatttgcaaataaattcattaaaaatcctacaatgtgattttctggattttttttctcattttgtctgtcatagttgaagtgaacctatgatgaaaattacaggcatctctcatctttttaagtgggacaacttgcacaattggtggctgactaaatacttttttgtcccactgtaggtatatacactgctcaaagaaaattaagggaacactaaaataacacatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394072 lncRNA upstream 12738 37517878 ~ 37518424 (+) True G348295
TU394070 lncRNA upstream 14948 37515831 ~ 37516214 (+) True G348293
TU394039 lncRNA upstream 21957 37441058 ~ 37509205 (+) True G348266
TU394085 lncRNA downstream 14691 37546146 ~ 37546352 (+) True G348308
TU394100 lncRNA downstream 39386 37570841 ~ 37571226 (+) True G348320
TU394103 lncRNA downstream 53974 37585429 ~ 37593367 (+) True G348323
TU394115 lncRNA downstream 74478 37605933 ~ 37651426 (+) True G348335
TU395071 lncRNA downstream 142077 37673532 ~ 37674468 (+) True G349173
XR_002473341.2 mRNA upstream 7094 37522809 ~ 37524068 (+) True LOC110522574
XM_036976216.1 mRNA upstream 29210 37445368 ~ 37501952 (+) False LOC110522576
XM_036976217.1 mRNA upstream 29210 37460008 ~ 37501952 (+) False LOC110522576
XM_021601026.2 mRNA upstream 129139 37284261 ~ 37402023 (+) False LOC110522568
XM_021601025.2 mRNA upstream 129139 37284262 ~ 37402023 (+) True LOC110522568
XR_005051527.1 mRNA downstream 316524 37847979 ~ 37855029 (+) True LOC118964471
XM_036976220.1 mRNA downstream 339297 37870752 ~ 37878518 (+) False actc1a
XM_036976221.1 mRNA downstream 340809 37872264 ~ 37878518 (+) True actc1a
XM_036976480.1 mRNA downstream 347947 37879402 ~ 37897524 (+) True LOC110521098
XM_021601035.2 mRNA downstream 366181 37897636 ~ 37899208 (+) True LOC110522584
TU394044 other upstream 34156 37445467 ~ 37497006 (+) False LOC110522576
TU393877 other upstream 370039 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1458206 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 1622711 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 1697318 35833369 ~ 35833844 (+) True G347151
TU395886 other downstream 873190 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 900724 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 1358928 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 1358928 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 1362688 38894143 ~ 38896521 (+) False LOC110522591

Expression Profile