RNA id: TU394100


Basic Information

Item Value
RNA id TU394100
length 386
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G348320
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37570841 ~ 37571226 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtccagtgttgtgtctggtatagggtccagtccagtgttgtgtctggtacagggtccagtccagtgttgtgtctggtatagggtccagtccagtgttgtgtctggtatagggtccagtccagtgttgtgtctggtacagggtccagtccagtgttgtgtctggtatagggtccagtccagtgttgtgtctggtatagggtccagtccagtgttgtgtctggtacagggtccagtccagtgttgtgtctggtacagggtccagtccagtgttgtgtctggtacagggtccagtccagtgttgtgtctggtacagggtccagtccagtgttgtgtctggtatagggcccagtccagtgttgtgtctggtacagggtccagtccagtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394085 lncRNA upstream 24489 37546146 ~ 37546352 (+) True G348308
TU394079 lncRNA upstream 39386 37531162 ~ 37531455 (+) True G348302
TU394072 lncRNA upstream 52417 37517878 ~ 37518424 (+) True G348295
TU394070 lncRNA upstream 54627 37515831 ~ 37516214 (+) True G348293
TU394043 lncRNA upstream 68989 37500149 ~ 37501852 (+) True LOC110522576
TU394103 lncRNA downstream 14203 37585429 ~ 37593367 (+) True G348323
TU394115 lncRNA downstream 34707 37605933 ~ 37651426 (+) True G348335
TU395071 lncRNA downstream 102306 37673532 ~ 37674468 (+) True G349173
TU395083 lncRNA downstream 125286 37696512 ~ 37696744 (+) True G349185
TU395113 lncRNA downstream 153157 37724383 ~ 37724644 (+) True G349215
XR_002473341.2 mRNA upstream 46773 37522809 ~ 37524068 (+) True LOC110522574
XM_036976216.1 mRNA upstream 68889 37445368 ~ 37501952 (+) False LOC110522576
XM_036976217.1 mRNA upstream 68889 37460008 ~ 37501952 (+) False LOC110522576
XM_021601026.2 mRNA upstream 168818 37284261 ~ 37402023 (+) False LOC110522568
XR_005051527.1 mRNA downstream 276753 37847979 ~ 37855029 (+) True LOC118964471
XM_036976220.1 mRNA downstream 299526 37870752 ~ 37878518 (+) False actc1a
XM_036976221.1 mRNA downstream 301038 37872264 ~ 37878518 (+) True actc1a
XM_036976480.1 mRNA downstream 308176 37879402 ~ 37897524 (+) True LOC110521098
XM_021601035.2 mRNA downstream 326410 37897636 ~ 37899208 (+) True LOC110522584
TU394044 other upstream 73835 37445467 ~ 37497006 (+) False LOC110522576
TU393877 other upstream 409718 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1497885 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 1662390 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 1736997 35833369 ~ 35833844 (+) True G347151
TU395886 other downstream 833419 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 860953 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 1319157 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 1319157 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 1322917 38894143 ~ 38896521 (+) False LOC110522591

Expression Profile