RNA id: TU395204


Basic Information

Item Value
RNA id TU395204
length 240
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id G349296
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37813187 ~ 37813716 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accagagggcaggctgatctcacggatagtagcccaacaaggcatgggagacaaggtaaccagagggcaggctgatctcacggatagtagcccaacaaggcatgggagacgaGGTAACCCGAGGACAGGCTGGGCTcacggatagtagcccaacaaggcatgggagacaaggtaaccagagggcaggctgggctcacggatagcagcccaacaaggcatgggagacaaggtaaccagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395194 lncRNA upstream 19612 37792057 ~ 37793575 (+) True G349286
TU395163 lncRNA upstream 48892 37763843 ~ 37764295 (+) True G349263
TU395113 lncRNA upstream 88543 37724383 ~ 37724644 (+) True G349215
TU395083 lncRNA upstream 116443 37696512 ~ 37696744 (+) True G349185
TU395071 lncRNA upstream 138719 37673532 ~ 37674468 (+) True G349173
TU395224 lncRNA downstream 36585 37850301 ~ 37850577 (+) True G349315
TU395277 lncRNA downstream 140526 37954242 ~ 37954697 (+) False G349367
TU395279 lncRNA downstream 140526 37954242 ~ 37955404 (+) True G349367
TU395337 lncRNA downstream 206127 38019843 ~ 38020608 (+) True G349404
TU395340 lncRNA downstream 209385 38023101 ~ 38023738 (+) True G349405
XR_002473341.2 mRNA upstream 289119 37522809 ~ 37524068 (+) True LOC110522574
XM_036976216.1 mRNA upstream 311235 37445368 ~ 37501952 (+) False LOC110522576
XM_036976217.1 mRNA upstream 311235 37460008 ~ 37501952 (+) False LOC110522576
XM_021601026.2 mRNA upstream 411164 37284261 ~ 37402023 (+) False LOC110522568
XR_005051527.1 mRNA downstream 34263 37847979 ~ 37855029 (+) True LOC118964471
XM_036976220.1 mRNA downstream 57036 37870752 ~ 37878518 (+) False actc1a
XM_036976221.1 mRNA downstream 58548 37872264 ~ 37878518 (+) True actc1a
XM_036976480.1 mRNA downstream 65686 37879402 ~ 37897524 (+) True LOC110521098
XM_021601035.2 mRNA downstream 83920 37897636 ~ 37899208 (+) True LOC110522584
TU394044 other upstream 316181 37445467 ~ 37497006 (+) False LOC110522576
TU393877 other upstream 652064 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1740231 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 1904736 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 1979343 35833369 ~ 35833844 (+) True G347151
TU395886 other downstream 590929 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 618463 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 1076667 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 1076667 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 1080427 38894143 ~ 38896521 (+) False LOC110522591

Expression Profile