RNA id: TU395224


Basic Information

Item Value
RNA id TU395224
length 277
lncRNA type intronic
GC content 0.37
exon number 1
gene id G349315
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37850301 ~ 37850577 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAaaattattggaaccatttctCTTGTCTGTGAAATTCTAACCAAGCGAGAGACTTtatcatttcttcaaacaatctaTCTTTATTATAAGATTTGCACATTTTTAAGCTAGTTAACGATCCACTCAACAACACTGCGTGGAAAAttctattttacctttatttaactaggcaagtcagttaagaacaaattcttattttctatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacggcagatttgtaccttgtcagctcgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395183 lncRNA upstream 28866 37775498 ~ 37821435 (+) True G349275
TU395204 lncRNA upstream 36585 37813187 ~ 37813716 (+) True G349296
TU395194 lncRNA upstream 56726 37792057 ~ 37793575 (+) True G349286
TU395163 lncRNA upstream 86006 37763843 ~ 37764295 (+) True G349263
TU395113 lncRNA upstream 125657 37724383 ~ 37724644 (+) True G349215
TU395277 lncRNA downstream 103665 37954242 ~ 37954697 (+) False G349367
TU395279 lncRNA downstream 103665 37954242 ~ 37955404 (+) True G349367
TU395337 lncRNA downstream 169266 38019843 ~ 38020608 (+) True G349404
TU395340 lncRNA downstream 172524 38023101 ~ 38023738 (+) True G349405
TU395353 lncRNA downstream 198153 38048730 ~ 38049008 (+) True G349416
XR_002473341.2 mRNA upstream 326233 37522809 ~ 37524068 (+) True LOC110522574
XM_036976216.1 mRNA upstream 348349 37445368 ~ 37501952 (+) False LOC110522576
XM_036976217.1 mRNA upstream 348349 37460008 ~ 37501952 (+) False LOC110522576
XM_021601026.2 mRNA upstream 448278 37284261 ~ 37402023 (+) False LOC110522568
XM_036976220.1 mRNA downstream 20175 37870752 ~ 37878518 (+) False actc1a
XM_036976221.1 mRNA downstream 21687 37872264 ~ 37878518 (+) True actc1a
XM_036976480.1 mRNA downstream 28825 37879402 ~ 37897524 (+) True LOC110521098
XM_021601035.2 mRNA downstream 47059 37897636 ~ 37899208 (+) True LOC110522584
XM_036976224.1 mRNA downstream 119145 37969722 ~ 38234678 (+) True LOC110521100
TU394044 other upstream 353295 37445467 ~ 37497006 (+) False LOC110522576
TU393877 other upstream 689178 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1777345 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 1941850 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 2016457 35833369 ~ 35833844 (+) True G347151
TU395886 other downstream 554068 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 581602 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 1039806 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 1039806 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 1043566 38894143 ~ 38896521 (+) False LOC110522591

Expression Profile