RNA id: TU395279


Basic Information

Item Value
RNA id TU395279
length 358
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G349367
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37954242 ~ 37955404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGGAATAGACCTCCTGCTGGCAGACCCAGGGGCTTTGCAGCTCAGCAACTAGAGTAGTGTCCAGTATAGTGTCCAGTGTAGTGTCCAGTATAGTGTCCAGTATAGGTCACCTTGACACACTAGATTAGTGTCCAGTATAGGTCATCTTGACACACTAGAGTAGTGTCCAGTATAGGTCACCTTGACACACTAGAGTAGTGTCCAGTATAGGTCACCTTGACACACTAGACTAATGTCCAGTATAGTGTAACTTGACACACTAGAGTAGTGTCCAGTATAGGTCACCTTGACACACTAGAGTAATGTCCAGTATAGGTCACCTTGACACACTAGAGTAGTGTCCAGTATAGTGTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395224 lncRNA upstream 103665 37850301 ~ 37850577 (+) True G349315
TU395183 lncRNA upstream 132807 37775498 ~ 37821435 (+) True G349275
TU395204 lncRNA upstream 140526 37813187 ~ 37813716 (+) True G349296
TU395194 lncRNA upstream 160667 37792057 ~ 37793575 (+) True G349286
TU395163 lncRNA upstream 189947 37763843 ~ 37764295 (+) True G349263
TU395337 lncRNA downstream 64439 38019843 ~ 38020608 (+) True G349404
TU395340 lncRNA downstream 67697 38023101 ~ 38023738 (+) True G349405
TU395353 lncRNA downstream 93326 38048730 ~ 38049008 (+) True G349416
TU395355 lncRNA downstream 94953 38050357 ~ 38051159 (+) True G349417
TU395356 lncRNA downstream 97172 38052576 ~ 38053084 (+) True G349418
XM_021601035.2 mRNA upstream 55034 37897636 ~ 37899208 (+) True LOC110522584
XM_036976480.1 mRNA upstream 56718 37879402 ~ 37897524 (+) True LOC110521098
XM_036976220.1 mRNA upstream 75724 37870752 ~ 37878518 (+) False actc1a
XM_036976221.1 mRNA upstream 75724 37872264 ~ 37878518 (+) True actc1a
XR_005051527.1 mRNA upstream 99213 37847979 ~ 37855029 (+) True LOC118964471
XM_036976224.1 mRNA downstream 14318 37969722 ~ 38234678 (+) True LOC110521100
XM_036976225.1 mRNA downstream 332793 38288197 ~ 38291538 (+) True LOC110522580
XM_036976229.1 mRNA downstream 670812 38626216 ~ 38650472 (+) False thbs1b
XM_036976230.1 mRNA downstream 670812 38626216 ~ 38651062 (+) True thbs1b
XR_002473345.2 mRNA downstream 862496 38817900 ~ 38820524 (+) False LOC110522590
TU394044 other upstream 457236 37445467 ~ 37497006 (+) False LOC110522576
TU393877 other upstream 793119 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1881286 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 2045791 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 2120398 35833369 ~ 35833844 (+) True G347151
TU395886 other downstream 449241 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 476775 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 934979 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 934979 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 938739 38894143 ~ 38896521 (+) False LOC110522591

Expression Profile