RNA id: TU395353


Basic Information

Item Value
RNA id TU395353
length 256
lncRNA type intronic
GC content 0.40
exon number 2
gene id G349416
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 38048730 ~ 38049008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatcagactgtataccacatggtatatcagactgtataccacatggtatatcagactgtataccacaggtatgacaaaacatgtatttttactgctctaattacattggtaaccagtttataatagcaataaggcacctcatgggtttgtggtatatggccaatataccacggctaagggcagtatccaggcactctgtaGTCTGTTGTgagtaagaacagcccttagccgtggtatattgaccatatacagtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395340 lncRNA upstream 24992 38023101 ~ 38023738 (+) True G349405
TU395337 lncRNA upstream 28122 38019843 ~ 38020608 (+) True G349404
TU395279 lncRNA upstream 93326 37954242 ~ 37955404 (+) True G349367
TU395277 lncRNA upstream 94033 37954242 ~ 37954697 (+) False G349367
TU395224 lncRNA upstream 198153 37850301 ~ 37850577 (+) True G349315
TU395355 lncRNA downstream 1349 38050357 ~ 38051159 (+) True G349417
TU395356 lncRNA downstream 3568 38052576 ~ 38053084 (+) True G349418
TU395378 lncRNA downstream 72378 38121386 ~ 38122431 (+) True G349440
TU395384 lncRNA downstream 93281 38142289 ~ 38143273 (+) False G349446
TU395385 lncRNA downstream 93281 38142289 ~ 38142613 (+) True G349446
XM_021601035.2 mRNA upstream 149522 37897636 ~ 37899208 (+) True LOC110522584
XM_036976480.1 mRNA upstream 151206 37879402 ~ 37897524 (+) True LOC110521098
XM_036976220.1 mRNA upstream 170212 37870752 ~ 37878518 (+) False actc1a
XM_036976221.1 mRNA upstream 170212 37872264 ~ 37878518 (+) True actc1a
XR_005051527.1 mRNA upstream 193701 37847979 ~ 37855029 (+) True LOC118964471
XM_036976225.1 mRNA downstream 239189 38288197 ~ 38291538 (+) True LOC110522580
XM_036976229.1 mRNA downstream 577208 38626216 ~ 38650472 (+) False thbs1b
XM_036976230.1 mRNA downstream 577208 38626216 ~ 38651062 (+) True thbs1b
XR_002473345.2 mRNA downstream 768892 38817900 ~ 38820524 (+) False LOC110522590
XR_005051532.1 mRNA downstream 776775 38825783 ~ 38885772 (+) False LOC118964474
TU394044 other upstream 551724 37445467 ~ 37497006 (+) False LOC110522576
TU393877 other upstream 887607 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1975774 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 2140279 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 2214886 35833369 ~ 35833844 (+) True G347151
TU395886 other downstream 355637 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 383171 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 841375 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 841375 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 845135 38894143 ~ 38896521 (+) False LOC110522591

Expression Profile