RNA id: TU395384


Basic Information

Item Value
RNA id TU395384
length 542
lncRNA type intronic
GC content 0.39
exon number 3
gene id G349446
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 38142289 ~ 38143273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTAATAGTTGTTTATAGTGGTTAGTTTTTGTTTACAGTGGCTAGTAGTTGATTACAGTGGTTAGTAGTGGTTTACAGTGGTTAATAGTTTGTTTACAGTGGTTAGTAGTTTGTTTACAGTGGTTAGTAGTTGTTTACAGTGGTTAGTTGTTGTTTACAGTGGTTAGTTGTTGTTTACAGTGGTTAGTTGTTGTTTACTACTGTTGGTTACAGTGGTTAGTTGTTGTTTACAGTGGTTGGTTGTTTACAGTGGTTGGTTGTTGTTTACAGTGGTTAGTTGTTGTTTACAGTGGTTAGTTGTTGTTTACAGTGGTTAGTTGTTGTTTACAGTGGTTAGTTGCTGTTTACGGTGTTTAGTTGTTTGTTTACAGTGGTCAGTCAGTCACCAACCGTTGGTCTTGGAAAGCTATTGGGTTGGCAGGCTTTTCTTTCAGCCCAGCTCTAATGATTAGTTGTTAAGCTGAACCGGCTGGGTTAGTGCTAGGTTGGAACACATAACCTCCTGTAGATGTCCAGAACCAGTAGTTTGTGGGCACTGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395378 lncRNA upstream 19858 38121386 ~ 38122431 (+) True G349440
TU395356 lncRNA upstream 89205 38052576 ~ 38053084 (+) True G349418
TU395355 lncRNA upstream 91130 38050357 ~ 38051159 (+) True G349417
TU395353 lncRNA upstream 93281 38048730 ~ 38049008 (+) True G349416
TU395340 lncRNA upstream 118551 38023101 ~ 38023738 (+) True G349405
TU395396 lncRNA downstream 32216 38175489 ~ 38176326 (+) True G349456
TU395437 lncRNA downstream 134186 38277459 ~ 38278479 (+) True G349497
TU395475 lncRNA downstream 209423 38352696 ~ 38362145 (+) True G349528
TU395476 lncRNA downstream 210151 38353424 ~ 38355731 (+) True G349529
TU395477 lncRNA downstream 211044 38354317 ~ 38361596 (+) True G349530
XM_021601035.2 mRNA upstream 243081 37897636 ~ 37899208 (+) True LOC110522584
XM_036976480.1 mRNA upstream 244765 37879402 ~ 37897524 (+) True LOC110521098
XM_036976220.1 mRNA upstream 263771 37870752 ~ 37878518 (+) False actc1a
XM_036976221.1 mRNA upstream 263771 37872264 ~ 37878518 (+) True actc1a
XR_005051527.1 mRNA upstream 287260 37847979 ~ 37855029 (+) True LOC118964471
XM_036976225.1 mRNA downstream 144924 38288197 ~ 38291538 (+) True LOC110522580
XM_036976229.1 mRNA downstream 482943 38626216 ~ 38650472 (+) False thbs1b
XM_036976230.1 mRNA downstream 482943 38626216 ~ 38651062 (+) True thbs1b
XR_002473345.2 mRNA downstream 674627 38817900 ~ 38820524 (+) False LOC110522590
XR_005051532.1 mRNA downstream 682510 38825783 ~ 38885772 (+) False LOC118964474
TU394044 other upstream 645283 37445467 ~ 37497006 (+) False LOC110522576
TU393877 other upstream 981166 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 2069333 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 2233838 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 2308445 35833369 ~ 35833844 (+) True G347151
TU395886 other downstream 261372 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 288906 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 747110 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 747110 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 750870 38894143 ~ 38896521 (+) False LOC110522591

Expression Profile