RNA id: TU395437


Basic Information

Item Value
RNA id TU395437
length 618
lncRNA type intronic
GC content 0.40
exon number 2
gene id G349497
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 38277459 ~ 38278479 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaagtttagtagagtacagtagagcacagtacagtagcgTACagtagcacagtacagtagagtttagtagagtagagcacagtagagtacagtagagcacagtagagtagagcacagtaaagtacagtagagcacagtagagtacagtagagcacagtagagtttagtagagtacagtacagtatagcttAGTAGCGTACAGTGGAGCTTAGTAGAGCCCAGTAGAGtttagtagagcacagtagagtttaGTAGAGTATATTAGAGTTTAGtaaagtacagcacagtagagcttagagtacagtagagtacagtagagcacagccgagtagagtacagtagagtacagtacagcacagtacagtagagtttactagagtacagtaaagtttactagagtacagcacagcacagtagagcttagagtacagtagagtacagtttagtagagtacagtagagtacagtttagtagagtacagtagagcacagcacagtagagtacagtagagtagactagtacagtagagtagagtttactagagtacagtagagtttactagtacagtacagcagactaGAGTTTACTAGAGtaaagtagaatagagtacagtagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395396 lncRNA upstream 101133 38175489 ~ 38176326 (+) True G349456
TU395384 lncRNA upstream 134186 38142289 ~ 38143273 (+) False G349446
TU395385 lncRNA upstream 134846 38142289 ~ 38142613 (+) True G349446
TU395378 lncRNA upstream 155028 38121386 ~ 38122431 (+) True G349440
TU395356 lncRNA upstream 224375 38052576 ~ 38053084 (+) True G349418
TU395475 lncRNA downstream 74217 38352696 ~ 38362145 (+) True G349528
TU395476 lncRNA downstream 74945 38353424 ~ 38355731 (+) True G349529
TU395477 lncRNA downstream 75838 38354317 ~ 38361596 (+) True G349530
TU395479 lncRNA downstream 76389 38354868 ~ 38363027 (+) True G349531
TU395481 lncRNA downstream 84890 38363369 ~ 38364394 (+) True G349533
XM_036976224.1 mRNA upstream 42781 37969722 ~ 38234678 (+) True LOC110521100
XM_021601035.2 mRNA upstream 378251 37897636 ~ 37899208 (+) True LOC110522584
XM_036976480.1 mRNA upstream 379935 37879402 ~ 37897524 (+) True LOC110521098
XM_036976220.1 mRNA upstream 398941 37870752 ~ 37878518 (+) False actc1a
XM_036976221.1 mRNA upstream 398941 37872264 ~ 37878518 (+) True actc1a
XM_036976225.1 mRNA downstream 9718 38288197 ~ 38291538 (+) True LOC110522580
XM_036976229.1 mRNA downstream 347737 38626216 ~ 38650472 (+) False thbs1b
XM_036976230.1 mRNA downstream 347737 38626216 ~ 38651062 (+) True thbs1b
XR_002473345.2 mRNA downstream 539421 38817900 ~ 38820524 (+) False LOC110522590
XR_005051532.1 mRNA downstream 547304 38825783 ~ 38885772 (+) False LOC118964474
TU394044 other upstream 780453 37445467 ~ 37497006 (+) False LOC110522576
TU393877 other upstream 1116336 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 2204503 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 2369008 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 2443615 35833369 ~ 35833844 (+) True G347151
TU395886 other downstream 126166 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 153700 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 611904 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 611904 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 615664 38894143 ~ 38896521 (+) False LOC110522591

Expression Profile