RNA id: TU395987


Basic Information

Item Value
RNA id TU395987
length 237
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G349945
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 38545448 ~ 38545684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggttgttcattgtagtttaatgaagacactatacatgaacaaactaacgaaaacaagaaacgtgagaactcaaaacagcccgatCTGGtgtaaacacaaagacaggaacaatcacccacaaacacacagtgaaacccaggctacctaaatatggttcccaatcagagacaatgacgaacacctgcctctgattgagaaccatatcaggccgaacatagaactagacaaactagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395985 lncRNA upstream 3377 38541851 ~ 38542071 (+) True G349943
TU395953 lncRNA upstream 57880 38487182 ~ 38487568 (+) True G349919
TU395952 lncRNA upstream 58945 38486227 ~ 38486503 (+) True G349918
TU395949 lncRNA upstream 62134 38483022 ~ 38483314 (+) True G349915
TU395915 lncRNA upstream 107235 38436972 ~ 38438213 (+) True G349881
TU396000 lncRNA downstream 22917 38568601 ~ 38568814 (+) True G349958
TU396002 lncRNA downstream 25585 38571269 ~ 38571500 (+) True G349960
TU396031 lncRNA downstream 98301 38643985 ~ 38645459 (+) True G349989
TU396042 lncRNA downstream 126760 38672444 ~ 38672646 (+) True G349999
TU396246 lncRNA downstream 187263 38732947 ~ 38733170 (+) True G350186
XM_036976225.1 mRNA upstream 253910 38288197 ~ 38291538 (+) True LOC110522580
XM_036976224.1 mRNA upstream 310770 37969722 ~ 38234678 (+) True LOC110521100
XM_021601035.2 mRNA upstream 646240 37897636 ~ 37899208 (+) True LOC110522584
XM_036976480.1 mRNA upstream 647924 37879402 ~ 37897524 (+) True LOC110521098
XM_036976221.1 mRNA upstream 666930 37872264 ~ 37878518 (+) True actc1a
XM_036976229.1 mRNA downstream 80532 38626216 ~ 38650472 (+) False thbs1b
XM_036976230.1 mRNA downstream 80532 38626216 ~ 38651062 (+) True thbs1b
XR_002473345.2 mRNA downstream 272216 38817900 ~ 38820524 (+) False LOC110522590
XR_005051532.1 mRNA downstream 280099 38825783 ~ 38885772 (+) False LOC118964474
XM_036976233.1 mRNA downstream 280105 38825789 ~ 38885772 (+) True LOC118964474
TU395908 other upstream 111424 38432179 ~ 38434024 (+) True G349877
TU395886 other upstream 139984 38404645 ~ 38405464 (+) True G349855
TU394044 other upstream 1048442 37445467 ~ 37497006 (+) False LOC110522576
TU393877 other upstream 1384325 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 2472492 36039166 ~ 36072956 (+) True LOC110522562
TU396266 other downstream 344699 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 344699 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 348459 38894143 ~ 38896521 (+) False LOC110522591
TU396268 other downstream 348459 38894143 ~ 38897656 (+) True LOC110522591
TU396290 other downstream 358046 38903730 ~ 38904774 (+) True G350211

Expression Profile