RNA id: TU396002


Basic Information

Item Value
RNA id TU396002
length 232
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G349960
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 38571269 ~ 38571500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacagcatggtagcaacaccacatgacaacaatatggtagcaacacaatatggcagcagcacaacatggtagaagcacaaaacatggtacaaacattattgggcatagACAACCgcacaaaggcaagaaggtagagacaacaatacatcacacgaagcagccacaactctTAGTAAAAGTGTCCAACATTGAGCCTTTgattgaagagatggagataaaactgtccagttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396000 lncRNA upstream 2455 38568601 ~ 38568814 (+) True G349958
TU395987 lncRNA upstream 25585 38545448 ~ 38545684 (+) True G349945
TU395985 lncRNA upstream 29198 38541851 ~ 38542071 (+) True G349943
TU395953 lncRNA upstream 83701 38487182 ~ 38487568 (+) True G349919
TU395952 lncRNA upstream 84766 38486227 ~ 38486503 (+) True G349918
TU396031 lncRNA downstream 72485 38643985 ~ 38645459 (+) True G349989
TU396042 lncRNA downstream 100944 38672444 ~ 38672646 (+) True G349999
TU396246 lncRNA downstream 161447 38732947 ~ 38733170 (+) True G350186
TU396254 lncRNA downstream 169187 38740687 ~ 38740898 (+) True G350193
TU396292 lncRNA downstream 188918 38760418 ~ 38763806 (+) True G350213
XM_036976225.1 mRNA upstream 279731 38288197 ~ 38291538 (+) True LOC110522580
XM_036976224.1 mRNA upstream 336591 37969722 ~ 38234678 (+) True LOC110521100
XM_021601035.2 mRNA upstream 672061 37897636 ~ 37899208 (+) True LOC110522584
XM_036976480.1 mRNA upstream 673745 37879402 ~ 37897524 (+) True LOC110521098
XM_036976221.1 mRNA upstream 692751 37872264 ~ 37878518 (+) True actc1a
XM_036976229.1 mRNA downstream 54716 38626216 ~ 38650472 (+) False thbs1b
XM_036976230.1 mRNA downstream 54716 38626216 ~ 38651062 (+) True thbs1b
XR_002473345.2 mRNA downstream 246400 38817900 ~ 38820524 (+) False LOC110522590
XR_005051532.1 mRNA downstream 254283 38825783 ~ 38885772 (+) False LOC118964474
XM_036976233.1 mRNA downstream 254289 38825789 ~ 38885772 (+) True LOC118964474
TU395908 other upstream 137245 38432179 ~ 38434024 (+) True G349877
TU395886 other upstream 165805 38404645 ~ 38405464 (+) True G349855
TU394044 other upstream 1074263 37445467 ~ 37497006 (+) False LOC110522576
TU393877 other upstream 1410146 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 2498313 36039166 ~ 36072956 (+) True LOC110522562
TU396266 other downstream 318883 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 318883 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 322643 38894143 ~ 38896521 (+) False LOC110522591
TU396268 other downstream 322643 38894143 ~ 38897656 (+) True LOC110522591
TU396290 other downstream 332230 38903730 ~ 38904774 (+) True G350211

Expression Profile