RNA id: TU396042


Basic Information

Item Value
RNA id TU396042
length 203
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G349999
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 38672444 ~ 38672646 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggtaaatggtctgatataccacggctgtcagccaatcagcattcagggctcgatccACCTGGTTTATAATAACATTTAGAGAACAGGTGAGACAGCAGAGACACTAAATCTCTTTTAAAAGTGCCACTAAGATTGTCCATAGAGCAGTGATGGATATAGATGGTCAAAGGCACAGCTTACCTTCCCCCTAATCCTAAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396031 lncRNA upstream 26985 38643985 ~ 38645459 (+) True G349989
TU396002 lncRNA upstream 100944 38571269 ~ 38571500 (+) True G349960
TU396000 lncRNA upstream 103630 38568601 ~ 38568814 (+) True G349958
TU395987 lncRNA upstream 126760 38545448 ~ 38545684 (+) True G349945
TU395985 lncRNA upstream 130373 38541851 ~ 38542071 (+) True G349943
TU396246 lncRNA downstream 60301 38732947 ~ 38733170 (+) True G350186
TU396254 lncRNA downstream 68041 38740687 ~ 38740898 (+) True G350193
TU396292 lncRNA downstream 87772 38760418 ~ 38763806 (+) True G350213
TU396298 lncRNA downstream 91281 38763927 ~ 38764322 (+) True G350219
TU396300 lncRNA downstream 94518 38767164 ~ 38767380 (+) True G350221
XM_036976230.1 mRNA upstream 21382 38626216 ~ 38651062 (+) True thbs1b
XM_036976229.1 mRNA upstream 21972 38626216 ~ 38650472 (+) False thbs1b
XM_036976225.1 mRNA upstream 380906 38288197 ~ 38291538 (+) True LOC110522580
XM_036976224.1 mRNA upstream 437766 37969722 ~ 38234678 (+) True LOC110521100
XM_021601035.2 mRNA upstream 773236 37897636 ~ 37899208 (+) True LOC110522584
XR_002473345.2 mRNA downstream 145254 38817900 ~ 38820524 (+) False LOC110522590
XR_005051532.1 mRNA downstream 153137 38825783 ~ 38885772 (+) False LOC118964474
XM_036976233.1 mRNA downstream 153143 38825789 ~ 38885772 (+) True LOC118964474
XM_036976234.1 mRNA downstream 217668 38890314 ~ 38897681 (+) False LOC110522591
XM_036976235.1 mRNA downstream 217668 38890314 ~ 38897681 (+) False LOC110522591
TU395908 other upstream 238420 38432179 ~ 38434024 (+) True G349877
TU395886 other upstream 266980 38404645 ~ 38405464 (+) True G349855
TU394044 other upstream 1175438 37445467 ~ 37497006 (+) False LOC110522576
TU393877 other upstream 1511321 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 2599488 36039166 ~ 36072956 (+) True LOC110522562
TU396266 other downstream 217737 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 217737 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 221497 38894143 ~ 38896521 (+) False LOC110522591
TU396268 other downstream 221497 38894143 ~ 38897656 (+) True LOC110522591
TU396290 other downstream 231084 38903730 ~ 38904774 (+) True G350211

Expression Profile