RNA id: TU396254


Basic Information

Item Value
RNA id TU396254
length 212
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G350193
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 38740687 ~ 38740898 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcccgagaattgaaccctgtggcacccccatagagactgccaaaggtccggacaacaggccctccaatttgacatactgaactctatcagagaagtagttggtgaaccaagcgaggcaatcatttgagaaaccaaggctgttgagtctgccaataagaatgttgtgattgacagagtcgaaagccttagccaggttgatgaatacggctgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396246 lncRNA upstream 7517 38732947 ~ 38733170 (+) True G350186
TU396042 lncRNA upstream 68041 38672444 ~ 38672646 (+) True G349999
TU396031 lncRNA upstream 95228 38643985 ~ 38645459 (+) True G349989
TU396002 lncRNA upstream 169187 38571269 ~ 38571500 (+) True G349960
TU396000 lncRNA upstream 171873 38568601 ~ 38568814 (+) True G349958
TU396292 lncRNA downstream 19520 38760418 ~ 38763806 (+) True G350213
TU396298 lncRNA downstream 23029 38763927 ~ 38764322 (+) True G350219
TU396300 lncRNA downstream 26266 38767164 ~ 38767380 (+) True G350221
TU396304 lncRNA downstream 40976 38781874 ~ 38782902 (+) True G350225
TU396312 lncRNA downstream 64822 38805720 ~ 38806230 (+) True G350232
XM_036976230.1 mRNA upstream 89625 38626216 ~ 38651062 (+) True thbs1b
XM_036976229.1 mRNA upstream 90215 38626216 ~ 38650472 (+) False thbs1b
XM_036976225.1 mRNA upstream 449149 38288197 ~ 38291538 (+) True LOC110522580
XM_036976224.1 mRNA upstream 506009 37969722 ~ 38234678 (+) True LOC110521100
XM_021601035.2 mRNA upstream 841479 37897636 ~ 37899208 (+) True LOC110522584
XR_002473345.2 mRNA downstream 77002 38817900 ~ 38820524 (+) False LOC110522590
XR_005051532.1 mRNA downstream 84885 38825783 ~ 38885772 (+) False LOC118964474
XM_036976233.1 mRNA downstream 84891 38825789 ~ 38885772 (+) True LOC118964474
XM_036976234.1 mRNA downstream 149416 38890314 ~ 38897681 (+) False LOC110522591
XM_036976235.1 mRNA downstream 149416 38890314 ~ 38897681 (+) False LOC110522591
TU395908 other upstream 306663 38432179 ~ 38434024 (+) True G349877
TU395886 other upstream 335223 38404645 ~ 38405464 (+) True G349855
TU394044 other upstream 1243681 37445467 ~ 37497006 (+) False LOC110522576
TU393877 other upstream 1579564 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 2667731 36039166 ~ 36072956 (+) True LOC110522562
TU396266 other downstream 149485 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 149485 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 153245 38894143 ~ 38896521 (+) False LOC110522591
TU396268 other downstream 153245 38894143 ~ 38897656 (+) True LOC110522591
TU396290 other downstream 162832 38903730 ~ 38904774 (+) True G350211

Expression Profile