RNA id: TU396300


Basic Information

Item Value
RNA id TU396300
length 217
lncRNA type intronic
GC content 0.38
exon number 1
gene id G350221
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 38767164 ~ 38767380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtcttTCCTGCAccaacactcttagaaaaaaatttGGTtctaaaaagggttcttcggttgtccccataggataaccatttttggttccaggtagaaccatagAGGGTTCTGGAACAAAAAAAAGAGTTATTCAAACAGTTCTCATATGGGAACAGCCAAAGAATCCTTAAATGTTCGCGAGAACATATTTTTTTTCTAAGAGGGTAGCACTCATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396298 lncRNA upstream 2842 38763927 ~ 38764322 (+) True G350219
TU396292 lncRNA upstream 3358 38760418 ~ 38763806 (+) True G350213
TU396254 lncRNA upstream 26266 38740687 ~ 38740898 (+) True G350193
TU396246 lncRNA upstream 33994 38732947 ~ 38733170 (+) True G350186
TU396042 lncRNA upstream 94518 38672444 ~ 38672646 (+) True G349999
TU396304 lncRNA downstream 14494 38781874 ~ 38782902 (+) True G350225
TU396312 lncRNA downstream 38340 38805720 ~ 38806230 (+) True G350232
TU396285 lncRNA downstream 41550 38808930 ~ 38809369 (+) True G350206
TU396289 lncRNA downstream 48967 38816347 ~ 38817388 (+) True G350210
TU396283 lncRNA downstream 50847 38818227 ~ 38820508 (+) True LOC110522590
XM_036976230.1 mRNA upstream 116102 38626216 ~ 38651062 (+) True thbs1b
XM_036976229.1 mRNA upstream 116692 38626216 ~ 38650472 (+) False thbs1b
XM_036976225.1 mRNA upstream 475626 38288197 ~ 38291538 (+) True LOC110522580
XM_036976224.1 mRNA upstream 532486 37969722 ~ 38234678 (+) True LOC110521100
XM_021601035.2 mRNA upstream 867956 37897636 ~ 37899208 (+) True LOC110522584
XR_002473345.2 mRNA downstream 50520 38817900 ~ 38820524 (+) False LOC110522590
XR_005051532.1 mRNA downstream 58403 38825783 ~ 38885772 (+) False LOC118964474
XM_036976233.1 mRNA downstream 58409 38825789 ~ 38885772 (+) True LOC118964474
XM_036976234.1 mRNA downstream 122934 38890314 ~ 38897681 (+) False LOC110522591
XM_036976235.1 mRNA downstream 122934 38890314 ~ 38897681 (+) False LOC110522591
TU395908 other upstream 333140 38432179 ~ 38434024 (+) True G349877
TU395886 other upstream 361700 38404645 ~ 38405464 (+) True G349855
TU394044 other upstream 1270158 37445467 ~ 37497006 (+) False LOC110522576
TU393877 other upstream 1606041 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 2694208 36039166 ~ 36072956 (+) True LOC110522562
TU396266 other downstream 123003 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 123003 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 126763 38894143 ~ 38896521 (+) False LOC110522591
TU396268 other downstream 126763 38894143 ~ 38897656 (+) True LOC110522591
TU396290 other downstream 136350 38903730 ~ 38904774 (+) True G350211

Expression Profile