RNA id: TU396312


Basic Information

Item Value
RNA id TU396312
length 511
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G350232
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 38805720 ~ 38806230 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCATCTCCTGCGGTCGGAACCCAACTCCCAACATCCATTTTAGTTCACCTCAAGAGGGTATTACACTTTAAATTACATCTAAGATCCCAGTAAATGGCCAATGAATAGGCTGGAGGTTAGTCGGAAGTCAATACTGGCCGCACTTCATGTGGAATGAAGTCAAGATTCATTTGGAAAATGAGACCTTTTAGAAATGAGGTGTGAGAATGGGTTTGCCCTGAGGTGCCAATAGTCCATTGCCCCGCTGGTGAACAGGCATTCCCGCAGAGGGGCCAATTTCAAGACAGAATGGCATTTATATGTCACTCTCTTCTTGCATTCAAGTCCACACAGTCAAAAAAATGGTTTGGAAAAACAGGCCAGAATATAGATTCACAATTTCATATGTTCAGATTGCCCaaatattacatcatgttaaatGTTGTCTCCCTACATCATGCGGTGACATCTCTCCATTCAACAACCGACGAGCGTGCGCTGTCCATTGTGATGAAAAATGCTACCTGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396304 lncRNA upstream 22818 38781874 ~ 38782902 (+) True G350225
TU396300 lncRNA upstream 38340 38767164 ~ 38767380 (+) True G350221
TU396298 lncRNA upstream 41398 38763927 ~ 38764322 (+) True G350219
TU396292 lncRNA upstream 41914 38760418 ~ 38763806 (+) True G350213
TU396254 lncRNA upstream 64822 38740687 ~ 38740898 (+) True G350193
TU396285 lncRNA downstream 2700 38808930 ~ 38809369 (+) True G350206
TU396289 lncRNA downstream 10117 38816347 ~ 38817388 (+) True G350210
TU396283 lncRNA downstream 11997 38818227 ~ 38820508 (+) True LOC110522590
TU396325 lncRNA downstream 56243 38862473 ~ 38862866 (+) True G350244
TU396330 lncRNA downstream 64479 38870709 ~ 38870993 (+) True G350249
XM_036976230.1 mRNA upstream 154658 38626216 ~ 38651062 (+) True thbs1b
XM_036976229.1 mRNA upstream 155248 38626216 ~ 38650472 (+) False thbs1b
XM_036976225.1 mRNA upstream 514182 38288197 ~ 38291538 (+) True LOC110522580
XM_036976224.1 mRNA upstream 571042 37969722 ~ 38234678 (+) True LOC110521100
XM_021601035.2 mRNA upstream 906512 37897636 ~ 37899208 (+) True LOC110522584
XR_002473345.2 mRNA downstream 11670 38817900 ~ 38820524 (+) False LOC110522590
XR_005051532.1 mRNA downstream 19553 38825783 ~ 38885772 (+) False LOC118964474
XM_036976233.1 mRNA downstream 19559 38825789 ~ 38885772 (+) True LOC118964474
XM_036976234.1 mRNA downstream 84084 38890314 ~ 38897681 (+) False LOC110522591
XM_036976235.1 mRNA downstream 84084 38890314 ~ 38897681 (+) False LOC110522591
TU395908 other upstream 371696 38432179 ~ 38434024 (+) True G349877
TU395886 other upstream 400256 38404645 ~ 38405464 (+) True G349855
TU394044 other upstream 1308714 37445467 ~ 37497006 (+) False LOC110522576
TU393877 other upstream 1644597 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 2732764 36039166 ~ 36072956 (+) True LOC110522562
TU396266 other downstream 84153 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 84153 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 87913 38894143 ~ 38896521 (+) False LOC110522591
TU396268 other downstream 87913 38894143 ~ 38897656 (+) True LOC110522591
TU396290 other downstream 97500 38903730 ~ 38904774 (+) True G350211

Expression Profile