RNA id: TU397558


Basic Information

Item Value
RNA id TU397558
length 221
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G351294
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 39986032 ~ 39986252 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttacagacagaggtGGTATCAGATCTACCTGTtcccctgttacagacagaggtGGTATCAGATCTATATGTtcccctgttacagacagaggtGGTATCAGATCTAACTGTGCTGTTCCACTCTTACAGAGGCCCTAAGAGGTAAAATAGTTAGCTTGCCGAAAGATGTACAAAATATTGGAAAGACTGTCTCTGTGAAATGATGTGCAattagtgtgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397553 lncRNA upstream 2583 39983177 ~ 39983449 (+) True G351289
TU397522 lncRNA upstream 23734 39961243 ~ 39962298 (+) True G351260
TU397515 lncRNA upstream 28878 39956712 ~ 39957154 (+) True G351254
TU397508 lncRNA upstream 35249 39950561 ~ 39950783 (+) True G351247
TU397353 lncRNA upstream 112017 39809097 ~ 39874015 (+) True G351101
TU397571 lncRNA downstream 28905 40015157 ~ 40015809 (+) True G351307
TU397576 lncRNA downstream 33887 40020139 ~ 40020393 (+) True G351312
TU397586 lncRNA downstream 40365 40026617 ~ 40026818 (+) True G351322
TU397683 lncRNA downstream 124001 40110253 ~ 40110482 (+) True G351418
TU397720 lncRNA downstream 165196 40151448 ~ 40151827 (+) True G351451
XM_036976258.1 mRNA upstream 334326 39563579 ~ 39651706 (+) False ino80
XM_036976261.1 mRNA upstream 334326 39563579 ~ 39651706 (+) False ino80
XM_036976262.1 mRNA upstream 334326 39563580 ~ 39651706 (+) False ino80
XM_036976260.1 mRNA upstream 334326 39563770 ~ 39651706 (+) False ino80
XM_036976263.1 mRNA upstream 423412 39528427 ~ 39562620 (+) True vps18
XM_021601071.2 mRNA downstream 196125 40182377 ~ 40265689 (+) False syndig1l
XM_036976266.1 mRNA downstream 325386 40311638 ~ 40312681 (+) True LOC118964479
XM_036976308.1 mRNA downstream 393282 40379534 ~ 40386303 (+) True LOC118936457
XR_005051537.1 mRNA downstream 405398 40391650 ~ 40393235 (+) False LOC110522596
XM_036976287.1 mRNA downstream 405399 40391651 ~ 40415618 (+) False LOC110522596
TU396863 other upstream 596558 39388589 ~ 39389474 (+) True G350665
TU396861 other upstream 596597 39388141 ~ 39389435 (+) False G350665
TU396290 other upstream 1081258 38903730 ~ 38904774 (+) True G350211
TU396268 other upstream 1088376 38894143 ~ 38897656 (+) True LOC110522591
TU396263 other upstream 1089511 38894143 ~ 38896521 (+) False LOC110522591
TU397710 other downstream 148435 40134687 ~ 40136773 (+) False G351441
TU397708 other downstream 148714 40134966 ~ 40136773 (+) True G351441
TU398718 other downstream 1003907 40990159 ~ 40990505 (+) True G352136
TU398979 other downstream 1223995 41210247 ~ 41210998 (+) True G352340
TU398983 other downstream 1224861 41211113 ~ 41213949 (+) True G352341

Expression Profile