RNA id: TU397720


Basic Information

Item Value
RNA id TU397720
length 266
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G351451
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 40151448 ~ 40151827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTATTTTTTACTAATAATTGGCAGTAACAATTCATACCAGAGGCTGTGTCTCTCTCCAggaggagccaacagtaccagaggctgtgtctctctccaggaggagacaacagtaccagaggctgtgtctctctccaggaggagccaacagtaccagagGCTGTGTCTCTCTCCAggaggagccaacagtaccagagGCTGTGTCTCCCTCCAGGAGGAGTAAACAGTGTCagaggctgtctctctctccaggaggaGTAAACAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397683 lncRNA upstream 40966 40110253 ~ 40110482 (+) True G351418
TU397586 lncRNA upstream 124630 40026617 ~ 40026818 (+) True G351322
TU397576 lncRNA upstream 131055 40020139 ~ 40020393 (+) True G351312
TU397571 lncRNA upstream 135639 40015157 ~ 40015809 (+) True G351307
TU397558 lncRNA upstream 165196 39986032 ~ 39986252 (+) True G351294
TU397759 lncRNA downstream 45371 40197198 ~ 40197651 (+) True G351477
TU397742 lncRNA downstream 52243 40204070 ~ 40268661 (+) False syndig1l
TU397744 lncRNA downstream 52243 40204070 ~ 40268661 (+) True syndig1l
TU397736 lncRNA downstream 81473 40233300 ~ 40269747 (+) False G351466
TU397737 lncRNA downstream 81473 40233300 ~ 40269747 (+) False G351466
XM_036976258.1 mRNA upstream 499742 39563579 ~ 39651706 (+) False ino80
XM_036976261.1 mRNA upstream 499742 39563579 ~ 39651706 (+) False ino80
XM_036976262.1 mRNA upstream 499742 39563580 ~ 39651706 (+) False ino80
XM_036976260.1 mRNA upstream 499742 39563770 ~ 39651706 (+) False ino80
XM_036976263.1 mRNA upstream 588828 39528427 ~ 39562620 (+) True vps18
XM_021601071.2 mRNA downstream 30550 40182377 ~ 40265689 (+) False syndig1l
XM_036976266.1 mRNA downstream 159811 40311638 ~ 40312681 (+) True LOC118964479
XM_036976308.1 mRNA downstream 227707 40379534 ~ 40386303 (+) True LOC118936457
XR_005051537.1 mRNA downstream 239823 40391650 ~ 40393235 (+) False LOC110522596
XM_036976287.1 mRNA downstream 239824 40391651 ~ 40415618 (+) False LOC110522596
TU397710 other upstream 14675 40134687 ~ 40136773 (+) False G351441
TU397708 other upstream 14675 40134966 ~ 40136773 (+) True G351441
TU396863 other upstream 761974 39388589 ~ 39389474 (+) True G350665
TU396861 other upstream 762013 39388141 ~ 39389435 (+) False G350665
TU396290 other upstream 1246674 38903730 ~ 38904774 (+) True G350211
TU398718 other downstream 838332 40990159 ~ 40990505 (+) True G352136
TU398979 other downstream 1058420 41210247 ~ 41210998 (+) True G352340
TU398983 other downstream 1059286 41211113 ~ 41213949 (+) True G352341
TU399156 other downstream 1214374 41366201 ~ 41366607 (+) True G352477
TU399921 other downstream 1972849 42124676 ~ 42125759 (+) True G353125

Expression Profile