RNA id: TU397736


Basic Information

Item Value
RNA id TU397736
length 345
lncRNA type sense_over
GC content 0.48
exon number 2
gene id G351466
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 40233300 ~ 40269747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactagacagaCACACATTAGACACACACTAGAAGCAGGCAGAAGGTGTATGGCAGACCCAGATAACAGCATATTATGGCTTAATTGATTTGCTAGTGTTTTTGGCCATTAGCACATTCACTACCCAATTAACTGAACCCCCCCTTGTTGTTTAGACCTGGTTACTTCCTGTTCCTGTTAGAGAATCCACCCGGCCTTATCATCCACCCGTGACCCCATTTTACAGTGTGTCCCCATGACAACCGTTTGACCCCACCAGTTGACCCCACCAGTTGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397759 lncRNA upstream 35649 40197198 ~ 40197651 (+) True G351477
TU397720 lncRNA upstream 81473 40151448 ~ 40151827 (+) True G351451
TU397683 lncRNA upstream 122818 40110253 ~ 40110482 (+) True G351418
TU397586 lncRNA upstream 206482 40026617 ~ 40026818 (+) True G351322
TU397576 lncRNA upstream 212907 40020139 ~ 40020393 (+) True G351312
TU397941 lncRNA downstream 52633 40322380 ~ 40453300 (+) True G351626
TU397961 lncRNA downstream 90192 40359939 ~ 40373918 (+) True G351643
TU398106 lncRNA downstream 196065 40465812 ~ 40466209 (+) True G351739
TU398139 lncRNA downstream 231177 40500924 ~ 40501156 (+) True G351771
TU398141 lncRNA downstream 232485 40502232 ~ 40502684 (+) True G351773
XM_036976258.1 mRNA upstream 581594 39563579 ~ 39651706 (+) False ino80
XM_036976261.1 mRNA upstream 581594 39563579 ~ 39651706 (+) False ino80
XM_036976262.1 mRNA upstream 581594 39563580 ~ 39651706 (+) False ino80
XM_036976260.1 mRNA upstream 581594 39563770 ~ 39651706 (+) False ino80
XM_036976263.1 mRNA upstream 670680 39528427 ~ 39562620 (+) True vps18
XM_036976266.1 mRNA downstream 41891 40311638 ~ 40312681 (+) True LOC118964479
XM_036976308.1 mRNA downstream 109787 40379534 ~ 40386303 (+) True LOC118936457
XR_005051537.1 mRNA downstream 121903 40391650 ~ 40393235 (+) False LOC110522596
XM_036976287.1 mRNA downstream 121904 40391651 ~ 40415618 (+) False LOC110522596
XM_036976281.1 mRNA downstream 121918 40391665 ~ 40415618 (+) False LOC110522596
TU397710 other upstream 96527 40134687 ~ 40136773 (+) False G351441
TU397708 other upstream 96527 40134966 ~ 40136773 (+) True G351441
TU396863 other upstream 843826 39388589 ~ 39389474 (+) True G350665
TU396861 other upstream 843865 39388141 ~ 39389435 (+) False G350665
TU396290 other upstream 1328526 38903730 ~ 38904774 (+) True G350211
TU398718 other downstream 720412 40990159 ~ 40990505 (+) True G352136
TU398979 other downstream 940500 41210247 ~ 41210998 (+) True G352340
TU398983 other downstream 941366 41211113 ~ 41213949 (+) True G352341
TU399156 other downstream 1096454 41366201 ~ 41366607 (+) True G352477
TU399921 other downstream 1854929 42124676 ~ 42125759 (+) True G353125

Expression Profile