RNA id: TCONS_00030725


Basic Information

Item Value
RNA id TCONS_00030725
length 2683
RNA type mRNA
GC content 0.47
exon number 12
gene id XLOC_015339
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 17524278 ~ 17575605 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAGCAAAAGCGACGATCACAGTGTTTTTACCACGTTTCATTGATGCCGAGTTTGCCTTCTACTGCCACTGTCATGGCGAACAGCTCAACAGAAACGCAACCAAACAGGAAGAAGAATTGCCTTTGTGCATTCTTCAAAAATAAACGGCTGGCTTTACAGAAAGCCAGTCAGTGTCGACGTCGAGACTGTAAAGTATCTCCTTTACAGCCTCCGTCTGACACAGAACCACCGGGTCCACAGCCAGGCCCATCAACAGATAATCTTCAGCTTGGTCTGTCCAGCTTTGAGTCTCTGGCTGTAGACGATCAGACAGATCTTCAGTCTGGTCCGTCCGGCCTCAGGTCTCGAGCTGTAGACGATCAGCGTGATGTTCAGCCTGGTCCATCCAGCAATAAGCTAACCAACTTTGAAGAAAACAATCCAGAGCCAGCTGAAGaaacacaaCCAAACAGGAAGAAGAATAGCCTTTGTGCATTCTTCAAGAATAAATGGCTGGCTATACAGAAAGCCAATCAGTGTCGACGTCGAGGCGGTAAAGTCTCTCCTTTACAGCCTCCGTCTGACACAGAACCACCGGGTCCACAGCCAGGCCCATCAACAGACGATCTTCAGCTTGGTCTCtccagcaataaaacaacaaactttGAAGCAAACAGAGACACTGCAGAGCCAGCTGAAGaaacacaaCCAAACAGGAAGAAGAAAAGCCTTTGTGAATTCTTCAAAAAGAAATGGCTGGCTTTACAGAAAGCCAATCAGTGTCGACGTCGAGGCAATAAAGTATCTCTTTTACAGCCTCCGTCTGACACAGAGCCAGTGGGTCTACAGCCAGGCCCATCCAACCTCAAGACAACATCTGCAGAAGATAAGCATGATCTTCAGTCTGCTCTGTCCAGCTTTGGGTCTCTGACTGTAGACGATCAGGCTGATCTTCAGTCGTGTCTGTCCGGCCTTGAGCCTCTGGCTGTAGACATTCAGGCTGAACCTCAGCTTGGTCTGTCCAGCTTTGAGCCTCTGGCTGTTAAAGATCAGGCTGATCTGCAGTCTACTCCATCCAGCCTTGAGCCTCTGGCTGCTGTAGACGATCAGACTGATCTTCAGCTTGGTCTGTCCAGTTTTGAGCCTCAGGCTGTAGACGATCAGACTGATCTTCAGCTTGGTCTGTCCGGCCTTAAGTCTCTGGTAGTAGTCGATCAGTCTGATATTTATCCTGGTCTTTCCAGCAATAAGCCAGCAAACTCTGATGCAAAACCAGCCAATCCAGAGCCAGATGAAGAAAAAGCAACAGATGTTGAGAAGAACAGGATCAATACATTCTTCAACAAAACGTGGCAGACTGTAAAACCTGTACTCAAAAAGAACAATGTGGTTAATCCACGGCCAGACACAGGTTCAGCTGCTGCAGAGCCAAATCCACACACTTCTGAGTCAGATCCACCTGCATCAGAGCCAGAACCACCCATTCCTAAGCCAGACTCACTTATCCCTGAGCCTGACTCGCCCATTCCTGAGCCTGATTCACCCATTCCTGAGCCTGATTCACCCATTCCTGAGCCAGAACCACCTGTTCCTAAGCCAGACTCACCCATTCCTGAGCAAGTAGTTCGATTACATCTGCAGGATCAAACTGACAATTCTTCAGACAAAGAATCTTCAGATGAAGAATCTTCAGAAGATTCCCAGCCTTGTTCGTCCAAGTTTGTTCGAGCACCTACCAAGCACAGACGTATTGGAGACAAAAGCTGGTTGAGAACCATCGCATCGCCAGGTCCAAATATCCTTCCATTTTCTGCAGTATACGAAGTTGGAGAGAAGCTTGGAGAAGGAGGCTTTGGCGAAGTGTTTGTGGGGCTCCACAAACTTAATCAACAACAGgttgCCATCAAATTTGTGAAAAAGACAAGAGCAGACCGGTATATCAGAATTCCTGGGCTTTCCAAGCCGCTGTTGGCAGAAGTGTCATTAAACCTGCTGCTGAATCAACAACCGATAAGCCCTTACATCGTTCACATGATAGACTGGTTTGATGAGGAACAACGCTACATACTCATCATGGAGTACCCGCAACCCTGCGTGAATCTGCTCAGCTTTATAACTCAGAACAAAACAAAGAGTGAATCTGAGGCACGTAGCATTTTAAACCAAGTGGTCCTCGGATGCAAGCACTGTCTCGACAGAGGTATCTTCCATCGGGACATCAAGTTAAACAACTGCGTGATCAACACCGAGACACACCAAGTCAAACTGATAGACTTTGGCTGTGGTGATCTCCTCAAGAGTGTCTATGTTGGTGGATTTACTGGAGGATGCTGTCCACCAGAGTATGTTGCGACCCTGGCATATCGGGCAGACCCAACAACGGCGTGGTCTCTGGGCTATCTGATGTACAAACTGATGTGTGGCATCTACCCCTTTAAATCACTGGAAGACATGAAGACAAACAGTCTGACTTTTCCATTGGGCCTATCCAGAGAATTCCAGGATTTGATCTCGGGGTGCCTGATTACTGATCCAAACAAAAGATCCACCGTAGATGACATCCTAAACCACGAGTGGTTTCAGCAAATGCTAGCAGCAGGAGTCAGCACAACCTGCACGTAACGGACATGAAAGAGTCTTCAATCAAGAATCTTATTGTAAAGGGATAGCTCAGCCTATTAATAAAGAAGAATGTTCTGAGGT

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-328 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000135823

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033511 lncRNA upstream 118211 17448148 ~ 17451433 (+) True XLOC_015336
TCONS_00033509 lncRNA upstream 210624 17335817 ~ 17359020 (+) False XLOC_015335
TCONS_00033510 lncRNA upstream 210624 17335845 ~ 17359020 (+) True XLOC_015335
TCONS_00033508 lncRNA upstream 658051 16906746 ~ 16911593 (+) True XLOC_015332
TCONS_00030705 lncRNA upstream 784027 16780731 ~ 16785617 (+) False XLOC_015327
TCONS_00033250 lncRNA downstream 35867 17611447 ~ 17613870 (+) True XLOC_015341
TCONS_00030727 lncRNA downstream 131912 17707492 ~ 17714820 (+) True XLOC_015343
TCONS_00033252 lncRNA downstream 757183 18332763 ~ 18334875 (+) False XLOC_015345
TCONS_00033251 lncRNA downstream 757183 18332763 ~ 18334875 (+) False XLOC_015345
TCONS_00033512 lncRNA downstream 757213 18332793 ~ 18335711 (+) True XLOC_015345
TCONS_00030724 mRNA upstream 10521 17556177 ~ 17559123 (+) False XLOC_015339
TCONS_00030723 mRNA upstream 26985 17540720 ~ 17542659 (+) True XLOC_015340
TCONS_00030721 mRNA upstream 43304 17524278 ~ 17526340 (+) False XLOC_015339
TCONS_00030720 mRNA upstream 58465 17508323 ~ 17511179 (+) True XLOC_015338
TCONS_00030719 mRNA upstream 116920 17451656 ~ 17452724 (+) True XLOC_015337
TCONS_00030728 mRNA downstream 441420 18017000 ~ 18022765 (+) True XLOC_015344
TCONS_00030731 mRNA downstream 1412827 18988407 ~ 18992350 (+) False XLOC_015348
TCONS_00030734 mRNA downstream 1528651 19104231 ~ 19144467 (+) True XLOC_015349
TCONS_00030735 mRNA downstream 1588385 19163965 ~ 19215112 (+) False XLOC_015350
TCONS_00030736 mRNA downstream 1620261 19195841 ~ 19214637 (+) False XLOC_015350
TCONS_00030715 other upstream 739880 16829689 ~ 16829764 (+) True XLOC_015330
TCONS_00030714 other upstream 744825 16824759 ~ 16824819 (+) True XLOC_015329
TCONS_00030677 other upstream 1408075 16160943 ~ 16161569 (+) False XLOC_015314
TCONS_00030675 other upstream 1701104 15868425 ~ 15868540 (+) True XLOC_015313
TCONS_00030665 other upstream 2396261 15173267 ~ 15173383 (+) True XLOC_015306
TCONS_00030726 other downstream 82378 17657958 ~ 17658076 (+) True XLOC_015342
TCONS_00030730 other downstream 926728 18502308 ~ 18502424 (+) True XLOC_015347
TCONS_00030744 other downstream 1929710 19505290 ~ 19507193 (+) True XLOC_015352
TCONS_00030745 other downstream 1943505 19519085 ~ 19519182 (+) True XLOC_015353
TCONS_00030749 other downstream 1999479 19575059 ~ 19575156 (+) True XLOC_015356

Expression Profile

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