RNA id: TU398205


Basic Information

Item Value
RNA id TU398205
length 265
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G351820
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 40635736 ~ 40636000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcctgtggtccaatggcacgttgtgttagctaatccaagtttctcATTTTAAAatggatcattagaaaacccttttgcaattgtgctagcacagctgaaaacttctGTCATGAattgaagaagcaataaaactggccttctttagactagttgagtatctggagcatcagcatttgtgggttcaattacaggcttaaaatggccagaaactaataactttcttctgaaacttgtcagtctattattgttctgagaaatgaaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398202 lncRNA upstream 1173 40632451 ~ 40634563 (+) False G351819
TU398203 lncRNA upstream 1173 40634004 ~ 40634563 (+) True G351819
TU398201 lncRNA upstream 2823 40632285 ~ 40632913 (+) False G351819
TU398204 lncRNA upstream 2823 40632451 ~ 40632913 (+) False G351819
TU398184 lncRNA upstream 26015 40609242 ~ 40609721 (+) True G351806
TU398219 lncRNA downstream 25322 40661322 ~ 40664629 (+) True G351831
TU398221 lncRNA downstream 29092 40665092 ~ 40665512 (+) True G351833
TU398224 lncRNA downstream 31919 40667919 ~ 40668205 (+) True G351836
TU398214 lncRNA downstream 38292 40674292 ~ 40674839 (+) True LOC110521109
TU398211 lncRNA downstream 41593 40677593 ~ 40678107 (+) False G351826
XM_021598373.2 mRNA upstream 4915 40626614 ~ 40630821 (+) True paqr8
NM_001124651.1 mRNA upstream 6052 40626393 ~ 40629684 (+) False paqr8
XM_036976311.1 mRNA upstream 38347 40579686 ~ 40597389 (+) True stmn4
XM_036976288.1 mRNA upstream 197928 40436551 ~ 40437808 (+) True LOC110522596
XM_036976290.1 mRNA upstream 202879 40431447 ~ 40432857 (+) False LOC110522596
XM_036976314.1 mRNA downstream 14654 40650654 ~ 40674577 (+) False LOC110521109
XM_036976315.1 mRNA downstream 14654 40650654 ~ 40674577 (+) False LOC110521109
XM_036976312.1 mRNA downstream 14655 40650655 ~ 40674577 (+) False LOC110521109
XM_021601088.2 mRNA downstream 72662 40708662 ~ 40714024 (+) False LOC110522626
XM_021601089.2 mRNA downstream 73292 40709292 ~ 40714024 (+) True LOC110522626
TU397710 other upstream 498963 40134687 ~ 40136773 (+) False G351441
TU397708 other upstream 498963 40134966 ~ 40136773 (+) True G351441
TU396863 other upstream 1246262 39388589 ~ 39389474 (+) True G350665
TU396861 other upstream 1246301 39388141 ~ 39389435 (+) False G350665
TU396290 other upstream 1730962 38903730 ~ 38904774 (+) True G350211
TU398718 other downstream 354159 40990159 ~ 40990505 (+) True G352136
TU398979 other downstream 574247 41210247 ~ 41210998 (+) True G352340
TU398983 other downstream 575113 41211113 ~ 41213949 (+) True G352341
TU399156 other downstream 730201 41366201 ~ 41366607 (+) True G352477
TU399921 other downstream 1488676 42124676 ~ 42125759 (+) True G353125

Expression Profile