RNA id: TCONS_00030723



Basic Information


Item Value
RNA id TCONS_00030723
length 887
RNA type mRNA
GC content 0.47
exon number 6
gene id XLOC_015340
representative True

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 17540720 ~ 17542659 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TTTGTTCGAGCACCTACTAAGCACAGACGTATTGGAGACAAAAGCTGGTTGAGAACCATCGCATCGCCGGGTCCAAATATCCTTCCATTTTCTGCAGTATACGAAGTTGGAGAGAAGCTTGGAGAAGGAGGCTTTGGCGAAGTGTTTGTGGGGCTCCACAAACTTAATCAACAACAGgttgCCATCAAATTTGTGAAGAAGACAAGAGCAGACCGGTATATCAGAATACCTGGGCTTTCCAAGCCGCTGTTGGCAGAAGTGTCATTAAACCTGCTGCTGAATCAACAACCGATAAGCCCTTACATCGTTCACATGATAGACTGGTTTGATGAGGAACAACGCTACATACTCATCATGGAGTACCCGCAACCCTGCGTGAATCTGCTCAGCTTTATAACTCAGAACAAAACAAAGAGTGAATCTGAGGCACGTAGCATTTTGTACCAAGTGGTCCTCGGATGCAAGCACTGTCTCGACAGAGGTATCTTCCATCGGGACATCAAGTTAAACAACTGCGTGATCAACACAGAGACACACCAAGTCAAACTGATAGACTTTGGCTGTGGAGATCTCCTCAAGAGTGTCTATGTGGGTGGATTTACTGGAGGATGCTGTCCACCAGAGTATGTTGCGACCCTGGCATATCGGGCAGACCCAACAACGGCGTGGTCTCTGGGCTATCTGATGTACAAACTGATGTGTGGCACCTACCCCTTTAAATCACTGGAAGACATGAAGACAAACAGTCTGACTTTTCCATTGGGCCTATCCAGAGAATTCCAGGATTTGATCTCGGGGTGCCTGATTACTGATCCAAACAAAAGATCCACCGTAGATGACATCCTAAACCACGAGTGGTTTCAGCAAATGCCAGCAGCAGGAGTCAG

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000114638

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00033511 lncRNA upstream 89287 17448148 ~ 17451433 (+) True XLOC_015336
TCONS_00033509 lncRNA upstream 181700 17335817 ~ 17359020 (+) False XLOC_015335
TCONS_00033510 lncRNA upstream 181700 17335845 ~ 17359020 (+) True XLOC_015335
TCONS_00033508 lncRNA upstream 629127 16906746 ~ 16911593 (+) True XLOC_015332
TCONS_00030705 lncRNA upstream 755103 16780731 ~ 16785617 (+) False XLOC_015327
TCONS_00033250 lncRNA downstream 68788 17611447 ~ 17613870 (+) True XLOC_015341
TCONS_00030727 lncRNA downstream 164833 17707492 ~ 17714820 (+) True XLOC_015343
TCONS_00033252 lncRNA downstream 790104 18332763 ~ 18334875 (+) False XLOC_015345
TCONS_00033251 lncRNA downstream 790104 18332763 ~ 18334875 (+) False XLOC_015345
TCONS_00033512 lncRNA downstream 790134 18332793 ~ 18335711 (+) True XLOC_015345
TCONS_00030721 mRNA upstream 14380 17524278 ~ 17526340 (+) False XLOC_015339
TCONS_00030720 mRNA upstream 29541 17508323 ~ 17511179 (+) True XLOC_015338
TCONS_00030719 mRNA upstream 87996 17451656 ~ 17452724 (+) True XLOC_015337
TCONS_00030718 mRNA upstream 354349 17181777 ~ 17186371 (+) True XLOC_015334
TCONS_00030717 mRNA upstream 468161 17055069 ~ 17072559 (+) True XLOC_015333
TCONS_00030724 mRNA downstream 13518 17556177 ~ 17559123 (+) False XLOC_015339
TCONS_00030725 mRNA downstream 26985 17569644 ~ 17575580 (+) True XLOC_015339
TCONS_00030728 mRNA downstream 474341 18017000 ~ 18022765 (+) True XLOC_015344
TCONS_00030731 mRNA downstream 1445748 18988407 ~ 18992350 (+) False XLOC_015348
TCONS_00030734 mRNA downstream 1561572 19104231 ~ 19144467 (+) True XLOC_015349
TCONS_00030715 other upstream 710956 16829689 ~ 16829764 (+) True XLOC_015330
TCONS_00030714 other upstream 715901 16824759 ~ 16824819 (+) True XLOC_015329
TCONS_00030677 other upstream 1379151 16160943 ~ 16161569 (+) False XLOC_015314
TCONS_00030675 other upstream 1672180 15868425 ~ 15868540 (+) True XLOC_015313
TCONS_00030665 other upstream 2367337 15173267 ~ 15173383 (+) True XLOC_015306
TCONS_00030726 other downstream 115299 17657958 ~ 17658076 (+) True XLOC_015342
TCONS_00030730 other downstream 959649 18502308 ~ 18502424 (+) True XLOC_015347
TCONS_00030744 other downstream 1962631 19505290 ~ 19507193 (+) True XLOC_015352
TCONS_00030745 other downstream 1976426 19519085 ~ 19519182 (+) True XLOC_015353
TCONS_00030749 other downstream 2032400 19575059 ~ 19575156 (+) True XLOC_015356

Expression Profile


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